Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11093 14 - 73366317 - 73366463 1 147

CTG ...

LRM ...

11095 14 + 28513204 - 28513395 1 192

CTG ...

LQP ...

11097 14 + 51105147 - 51105185 1 39

CTG ...

LQR ...

11099 14 + 47663992 - 47664093 1 102

ATG ...

MGP ...

11101 14 - 73366317 - 73366448 1 132

CTG ...

LLA ...

11103 14 + 54440372 - 54440470 1 99

CTG ...

LEV ...

11105 14 + 26655915 - 26655986 1 72

GTG ...

VLH ...

11107 14 - 57100103 - 57100147 1 45

TTG ...

LHS ...

11109 14 + 52292620 - 52292673 1 54

CTG ...

LLS ...

11112 14 - 20324471 - 20324515 1 45

GTG ...

VMM ...

11114 14 - 73366317 - 73366382 1 66

GTG ...

VCL ...

11116 14 - 57100448 - 57100594 1 147

CTG ...

LQH ...

11118 14 + 51105075 - 51105185 1 111

CTG ...

LQY ...

11120 14 + 26653939 - 26653986 1 48

CTG ...

LQS ...

11122 14 - 121293486 - 121294278 2 93

CTG ...

LGT ...

11124 14 - 73365817 - 73366409 2 135

TTG ...

LRK ...

11126 14 + 47384631 - 47385603 2 216

ATG ...

MLP ...

11128 14 + 103572058 - 103577854 4 150

ATG ...

MAK ...

11130 1 - 71650558 - 71650611 1 54

CTG ...

LYL ...

11132 14 + 105292328 - 105294844 2 84

CTG ...

LPW ...

11135 14 + 47384661 - 47385603 2 186

ATG ...

MRT ...

11137 14 + 63134012 - 63135622 2 54

GTG ...

VWH ...

11139 14 - 46811752 - 46814998 4 240

TTG ...

LRK ...

11142 14 - 73365817 - 73366457 2 183

ATG ...

MPQ ...

11144 14 + 103576224 - 103577854 2 51

ATG ...

MPR ...

11146 14 + 55580393 - 55580762 2 54

CTG ...

LRS ...

11149 14 - 63159101 - 63163369 2 114

ATG ...

MTQ ...

11151 14 - 73365817 - 73366364 2 90

TTG ...

LRT ...

11153 14 + 26653894 - 26655982 2 156

CTG ...

LPN ...

11155 14 - 73366500 - 73368462 3 192

CTG ...

LCL ...

11157 14 + 63134029 - 63135630 2 45

GTG ...

VDP ...

11159 14 + 63135682 - 63138118 3 246

TTG ...

LDR ...

11161 14 + 105292340 - 105294844 2 72

CTG ...

LLQ ...

11163 14 - 73365817 - 73366430 2 156

TTG ...

LKR ...

11165 14 + 122146672 - 122148000 2 126

ATG ...

MSG ...

11167 14 - 57124763 - 57130835 3 90

CTG ...

LGA ...

11169 14 + 122143487 - 122145130 2 63

TTG ...

LPD ...

11171 14 + 63135649 - 63138118 3 279

ATG ...

MHG ...

11173 14 - 20456583 - 20458619 2 69

CTG ...

LAR ...

11175 14 + 34093316 - 34093897 3 156

GTG ...

VDP ...

11178 14 + 47384634 - 47385603 2 213

TTG ...

LPS ...

11180 14 + 103564785 - 103570199 2 87

CTG ...

LRI ...

11182 14 + 63134020 - 63135630 2 54

CTG ...

LSW ...

11184 14 + 47384628 - 47385603 2 219

ATG ...

MML ...

11186 1 + 45321530 - 45321610 1 81

ATG ...

MSL ...

11188 14 - 20460456 - 20462631 2 105

TTG ...

LDE ...

11190 14 - 73365817 - 73366349 2 75

CTG ...

LPT ...

11192 14 - 73366500 - 73368405 2 135

TTG ...

LDR ...

11194 14 + 63135646 - 63138118 3 282

TTG ...

LMH ...

11196 14 - 20460456 - 20462583 2 57

TTG ...

LNV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5