Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

11198 14 - 73365817 - 73366376 2 102

CTG ...

LYQ ...

11200 14 + 47384682 - 47385603 2 165

TTG ...

LCV ...

11202 14 + 26653939 - 26655982 2 111

CTG ...

LQS ...

11204 14 - 57124763 - 57130865 3 120

TTG ...

LQR ...

11206 14 + 26653840 - 26655982 2 210

CTG ...

LED ...

11208 14 + 30566942 - 30568170 2 126

CTG ...

LAH ...

11210 14 + 63135637 - 63138118 3 291

CTG ...

LKP ...

11212 14 - 46811752 - 46814342 3 171

TTG ...

LSV ...

11214 14 - 55708726 - 55708895 2 45

ATG ...

MIL ...

11216 14 - 46811752 - 46814336 3 165

GTG ...

VCC ...

11218 14 - 52162705 - 52163216 2 93

ATG ...

MKI ...

11220 14 + 105292325 - 105294844 2 87

CTG ...

LLP ...

11222 14 - 73366500 - 73368444 3 174

TTG ...

LCF ...

11224 14 - 20460456 - 20462619 2 93

TTG ...

LRR ...

11226 14 + 34093244 - 34093897 3 228

GTG ...

VYT ...

11228 14 + 30568290 - 30568978 2 72

ATG ...

MPH ...

11230 14 + 30568308 - 30568978 2 54

TTG ...

LLT ...

11232 14 + 34093268 - 34093897 3 204

TTG ...

LSA ...

11234 14 - 73366500 - 73368456 3 186

CTG ...

LMW ...

11236 14 - 52162705 - 52163240 2 117

ATG ...

MKR ...

11238 14 + 105292310 - 105294844 2 102

CTG ...

LKR ...

11240 14 + 99303419 - 99313211 2 120

TTG ...

LHK ...

11242 14 - 63159101 - 63163348 2 93

CTG ...

LRA ...

11244 14 - 73365817 - 73366463 2 189

CTG ...

LRM ...

11246 14 + 122146717 - 122148000 2 81

ATG ...

MCC ...

11248 14 - 73366500 - 73368420 2 150

GTG ...

VTW ...

11250 14 - 73366500 - 73368453 3 183

ATG ...

MWL ...

11252 14 + 26653864 - 26655982 2 186

GTG ...

VLL ...

11254 1 - 135882477 - 135882581 1 105

CTG ...

LML ...

11256 14 - 20462698 - 20462938 2 60

ATG ...

MMP ...

11258 14 + 25698321 - 25699565 2 120

CTG ...

LHD ...

11260 14 - 55708726 - 55708889 2 39

CTG ...

LFG ...

11262 14 + 26653867 - 26655982 2 183

CTG ...

LLL ...

11264 14 - 73365817 - 73366382 2 108

GTG ...

VCL ...

11266 14 + 103576233 - 103577854 2 42

CTG ...

LRE ...

11268 14 - 73366500 - 73368447 3 177

CTG ...

LLC ...

11270 14 - 57124763 - 57130847 3 102

GTG ...

VTL ...

11272 14 - 73365817 - 73366448 2 174

CTG ...

LLA ...

11274 14 + 63134014 - 63135630 2 60

GTG ...

VAL ...

11276 14 - 55709565 - 55710544 3 189

ATG ...

MCL ...

11278 14 + 26653852 - 26655982 2 198

CTG ...

LQD ...

11280 14 + 25698339 - 25699565 2 102

CTG ...

LAR ...

11282 15 - 74995384 - 74995422 1 39

TTG ...

LKV ...

11285 15 + 102326490 - 102326546 1 57

GTG ...

VEA ...

11288 15 - 99780272 - 99780322 1 51

ATG ...

MMR ...

11291 1 - 74282427 - 74282465 1 39

ATG ...

MAG ...

11294 15 - 11986509 - 11986571 1 63

CTG ...

LLD ...

11297 1 - 84760759 - 84760839 1 81

ATG ...

MVQ ...

11299 15 + 25971910 - 25971942 1 33

ATG ...

MTL ...

11302 15 - 63804483 - 63804518 1 36

ATG ...

MPV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5