Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10983 14 - 20324471 - 20324509 1 39

ATG ...

MTW ...

10986 14 - 55662588 - 55662623 1 36

ATG ...

MMR ...

10989 14 + 28513246 - 28513395 1 150

CTG ...

LPL ...

10991 14 - 57100506 - 57100634 1 129

CTG ...

LQR ...

10993 14 - 57100448 - 57100561 1 114

ATG ...

MLR ...

10995 14 + 26646671 - 26646703 1 33

CTG ...

LLA ...

10997 14 + 105294782 - 105294844 1 63

TTG ...

LVF ...

10999 14 + 51105021 - 51105185 1 165

GTG ...

VQT ...

11001 14 - 73366317 - 73366376 1 60

CTG ...

LYQ ...

11003 14 + 47384682 - 47384771 1 90

TTG ...

LCV ...

11005 14 - 20324471 - 20324512 1 42

ATG ...

MMT ...

11007 14 + 51105068 - 51105115 1 48

GTG ...

VAS ...

11009 14 - 55704281 - 55704421 1 141

TTG ...

LVR ...

11011 14 + 63135646 - 63135726 1 81

TTG ...

LMH ...

11013 14 + 26638453 - 26638494 1 42

CTG ...

LFG ...

11015 14 - 73368291 - 73368374 1 84

GTG ...

VFR ...

11017 14 + 63138038 - 63138118 1 81

ATG ...

MVA ...

11019 14 - 57100448 - 57100573 1 126

CTG ...

LQE ...

11021 14 + 51162603 - 51162656 1 54

GTG ...

VMM ...

11023 14 + 21020668 - 21020697 1 30

CTG ...

LRT ...

11025 14 + 26653137 - 26653181 1 45

GTG ...

VKE ...

11027 14 - 20462616 - 20462648 1 33

ATG ...

MLP ...

11029 14 + 8039751 - 8039795 1 45

CTG ...

LAE ...

11032 14 - 57124606 - 57124647 1 42

CTG ...

LQH ...

11035 14 + 26653894 - 26653986 1 93

CTG ...

LPN ...

11037 14 + 20688785 - 20688835 1 51

ATG ...

MTV ...

11039 14 + 63138060 - 63138122 1 63

ATG ...

MEL ...

11041 14 + 74745698 - 74745730 1 33

TTG ...

LCL ...

11044 14 + 47385544 - 47385603 1 60

CTG ...

LTT ...

11046 14 + 7919195 - 7919230 1 36

CTG ...

LRD ...

11049 14 + 51105057 - 51105185 1 129

CTG ...

LEH ...

11051 1 - 120116382 - 120116468 1 87

CTG ...

LLF ...

11053 14 + 26655930 - 26655986 1 57

CTG ...

LVC ...

11055 14 + 26646645 - 26646698 1 54

GTG ...

VFS ...

11057 1 - 178330583 - 178330675 1 93

GTG ...

VAR ...

11059 14 + 122008805 - 122008873 1 69

TTG ...

LEP ...

11061 1 - 161244207 - 161244326 1 120

ATG ...

MVK ...

11063 14 - 57124666 - 57124797 1 132

CTG ...

LGD ...

11065 14 + 14775251 - 14775313 1 63

GTG ...

VVC ...

11068 14 - 52084154 - 52084186 1 33

ATG ...

MLM ...

11071 14 + 26646664 - 26646759 1 96

TTG ...

LDA ...

11073 14 + 51104979 - 51105185 1 207

CTG ...

LQR ...

11075 14 - 57100506 - 57100613 1 108

ATG ...

MSK ...

11077 14 - 73368295 - 73368420 1 126

GTG ...

VTW ...

11079 14 + 54429594 - 54429728 1 135

CTG ...

LLT ...

11082 14 - 37133213 - 37133266 1 54

ATG ...

MLP ...

11085 1 + 130719080 - 130719112 1 33

ATG ...

MCS ...

11087 1 - 178331837 - 178331893 1 57

CTG ...

LKT ...

11089 14 + 122146717 - 122146788 1 72

ATG ...

MCC ...

11091 14 + 54429597 - 54429728 1 132

CTG ...

LTQ ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5