Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10874 14 - 57100506 - 57100598 1 93

TTG ...

LSA ...

10876 14 - 57100428 - 57100469 1 42

ATG ...

MWP ...

10878 14 - 66190083 - 66190175 1 93

ATG ...

MLW ...

10881 14 + 51105117 - 51105185 1 69

CTG ...

LSR ...

10883 14 + 99303419 - 99303481 1 63

TTG ...

LHK ...

10886 14 - 63163280 - 63163348 1 69

CTG ...

LRA ...

10888 14 + 28522721 - 28522831 1 111

CTG ...

LCA ...

10890 14 + 20967539 - 20967580 1 42

TTG ...

LEK ...

10892 14 + 63142265 - 63142339 1 75

GTG ...

VAL ...

10894 14 + 28522769 - 28522831 1 63

GTG ...

VQQ ...

10896 14 + 51162609 - 51162656 1 48

ATG ...

MQC ...

10898 14 + 63134014 - 63134058 1 45

GTG ...

VAL ...

10900 14 - 101637063 - 101637092 1 30

GTG ...

VET ...

10903 14 + 28522553 - 28522609 1 57

CTG ...

LAA ...

10905 14 + 63141819 - 63141848 1 30

CTG ...

LAG ...

10907 14 + 55580393 - 55580431 1 39

CTG ...

LRS ...

10910 14 - 55704281 - 55704409 1 129

GTG ...

VEY ...

10912 14 + 63136442 - 63136486 1 45

CTG ...

LHS ...

10914 14 - 7973974 - 7974033 1 60

TTG ...

LAD ...

10916 14 + 63138053 - 63138118 1 66

CTG ...

LEH ...

10918 14 - 121460635 - 121460676 1 42

TTG ...

LKH ...

10921 14 + 47384631 - 47384771 1 141

ATG ...

MLP ...

10923 14 - 57100506 - 57100577 1 72

CTG ...

LAA ...

10925 14 + 20987072 - 20987122 1 51

GTG ...

VCY ...

10927 14 + 118953133 - 118953186 1 54

ATG ...

MWR ...

10930 14 + 64767628 - 64767666 1 39

ATG ...

MLT ...

10932 14 + 122143487 - 122143519 1 33

TTG ...

LPD ...

10934 14 + 64767625 - 64767666 1 42

ATG ...

MML ...

10936 14 + 26646642 - 26646698 1 57

GTG ...

VVF ...

10938 14 - 57100248 - 57100313 1 66

TTG ...

LKP ...

10940 14 + 28513309 - 28513395 1 87

ATG ...

MPV ...

10942 14 + 20967551 - 20967580 1 30

CTG ...

LFR ...

10944 1 - 178333568 - 178333603 1 36

TTG ...

LIY ...

10946 14 - 73365759 - 73365827 1 69

GTG ...

VLR ...

10948 14 + 63142271 - 63142339 1 69

TTG ...

LNQ ...

10950 14 - 73366317 - 73366430 1 114

TTG ...

LKR ...

10952 14 + 54469705 - 54469770 1 66

GTG ...

VVP ...

10954 14 + 76133090 - 76133131 1 42

GTG ...

VGE ...

10957 14 + 47384628 - 47384771 1 144

ATG ...

MML ...

10959 14 - 57100610 - 57100744 1 135

TTG ...

LGH ...

10961 1 + 63178440 - 63178571 1 132

CTG ...

LPG ...

10963 14 - 57100647 - 57100772 1 126

GTG ...

VPT ...

10965 14 + 105294777 - 105294830 1 54

CTG ...

LLW ...

10968 14 - 57100103 - 57100237 1 135

TTG ...

LAL ...

10970 14 + 47664004 - 47664093 1 90

GTG ...

VNL ...

10973 14 + 28522550 - 28522609 1 60

GTG ...

VLA ...

10975 14 - 73368291 - 73368386 1 96

GTG ...

VLV ...

10977 14 + 47384634 - 47384771 1 138

TTG ...

LPS ...

10979 14 + 20983388 - 20983480 1 93

TTG ...

LQR ...

10981 14 + 20688773 - 20688835 1 63

GTG ...

VWM ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5