Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10754 14 + 54437698 - 54437730 1 33

GTG ...

VDG ...

10757 14 + 103564785 - 103564868 1 84

CTG ...

LRI ...

10760 14 - 57100448 - 57100522 1 75

CTG ...

LGS ...

10762 14 + 26655935 - 26655982 1 48

CTG ...

LYE ...

10764 1 + 58401180 - 58401221 1 42

TTG ...

LLR ...

10766 14 - 73365817 - 73365855 1 39

CTG ...

LLI ...

10768 14 - 20458566 - 20458619 1 54

CTG ...

LAR ...

10771 14 - 31000649 - 31000723 1 75

GTG ...

VDC ...

10774 14 + 25874655 - 25874714 1 60

TTG ...

LFI ...

10777 14 + 21003097 - 21003126 1 30

TTG ...

LAG ...

10780 14 + 63135649 - 63135726 1 78

ATG ...

MHG ...

10782 14 - 46780156 - 46780188 1 33

GTG ...

VSC ...

10785 14 - 57100506 - 57100565 1 60

ATG ...

MYA ...

10787 14 - 52182198 - 52182275 1 78

TTG ...

LTL ...

10790 14 - 73368295 - 73368405 1 111

TTG ...

LDR ...

10792 14 + 24492091 - 24492120 1 30

ATG ...

MSL ...

10795 14 + 51162606 - 51162656 1 51

ATG ...

MMQ ...

10798 14 - 57100647 - 57100691 1 45

TTG ...

LER ...

10800 14 + 51105096 - 51105185 1 90

GTG ...

VQE ...

10803 14 - 20462551 - 20462631 1 81

TTG ...

LDE ...

10805 14 - 73368291 - 73368389 1 99

GTG ...

VVL ...

10807 14 - 70139166 - 70139195 1 30

TTG ...

LRC ...

10810 14 - 57100103 - 57100231 1 129

CTG ...

LPQ ...

10812 14 + 26646674 - 26646703 1 30

CTG ...

LAR ...

10814 1 + 45327614 - 45327646 1 33

CTG ...

LES ...

10816 14 - 73363069 - 73363098 1 30

TTG ...

LRT ...

10818 14 + 63135637 - 63135726 1 90

CTG ...

LKP ...

10820 14 + 26646659 - 26646703 1 45

TTG ...

LDW ...

10822 14 + 63135662 - 63135694 1 33

ATG ...

MVQ ...

10824 14 - 7973974 - 7974072 1 99

CTG ...

LAE ...

10827 14 + 75962977 - 75963033 1 57

GTG ...

VGK ...

10830 14 + 30566942 - 30567103 1 162

CTG ...

LAH ...

10832 14 - 57100103 - 57100246 1 144

ATG ...

MQR ...

10834 1 - 182489949 - 182489993 1 45

ATG ...

MRT ...

10837 14 + 54435862 - 54435897 1 36

GTG ...

VTG ...

10840 14 + 20840582 - 20840653 1 72

CTG ...

LML ...

10843 14 - 55704281 - 55704424 1 144

TTG ...

LLV ...

10846 14 + 47385559 - 47385603 1 45

TTG ...

LRS ...

10848 14 + 47385538 - 47385603 1 66

TTG ...

LKL ...

10850 14 + 121907293 - 121907328 1 36

TTG ...

LEA ...

10853 14 + 54469723 - 54469770 1 48

TTG ...

LDP ...

10856 14 - 57124666 - 57124809 1 144

CTG ...

LHD ...

10858 1 - 153158931 - 153158960 1 30

CTG ...

LDN ...

10860 14 - 73368291 - 73368380 1 90

GTG ...

VHV ...

10862 14 + 63138069 - 63138122 1 54

CTG ...

LDK ...

10864 14 + 25699472 - 25699522 1 51

ATG ...

MAS ...

10866 1 - 86356948 - 86357037 1 90

CTG ...

LLL ...

10868 14 + 103610725 - 103610823 1 99

GTG ...

VKY ...

10870 14 + 63138041 - 63138118 1 78

GTG ...

VAI ...

10872 14 + 63141792 - 63141848 1 57

CTG ...

LGS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5