Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10627 13 - 64368196 - 64369077 2 93

GTG ...

VQS ...

10629 13 - 64366554 - 64366935 2 156

TTG ...

LLS ...

10631 13 + 3556479 - 3556933 2 42

CTG ...

LAI ...

10633 13 + 43400928 - 43401322 2 33

CTG ...

LSV ...

10636 13 - 74704103 - 74713674 2 132

ATG ...

MQQ ...

10638 13 + 69621647 - 69623195 2 66

ATG ...

MDN ...

10640 13 - 55320318 - 55320768 3 132

ATG ...

MMF ...

10642 1 + 106956412 - 106956465 1 54

ATG ...

MKN ...

10644 13 - 6586559 - 6587135 3 117

CTG ...

LIK ...

10646 13 - 56083285 - 56084293 3 108

TTG ...

LPR ...

10648 13 - 74724789 - 74725479 3 189

CTG ...

LCS ...

10650 13 - 6587095 - 6588520 2 51

TTG ...

LKS ...

10652 1 + 189798559 - 189798609 1 51

ATG ...

MGR ...

10655 13 + 3556491 - 3556933 2 30

TTG ...

LHC ...

10657 13 - 54606673 - 54611104 2 45

CTG ...

LRS ...

10659 13 - 74724789 - 74725440 2 150

TTG ...

LKP ...

10661 13 - 55499203 - 55504707 2 69

ATG ...

MCA ...

10669 14 - 63163280 - 63163369 1 90

ATG ...

MTQ ...

10672 14 + 30568183 - 30568314 1 132

GTG ...

VAR ...

10675 14 - 73366317 - 73366457 1 141

ATG ...

MPQ ...

10678 1 - 75215622 - 75215780 1 159

TTG ...

LMY ...

10680 1 - 135884961 - 135885092 1 132

CTG ...

LQA ...

10682 14 + 26653131 - 26653181 1 51

ATG ...

MIV ...

10685 14 + 26655947 - 26655982 1 36

CTG ...

LDW ...

10687 1 - 86351434 - 86351475 1 42

TTG ...

LSK ...

10689 14 + 47384661 - 47384771 1 111

ATG ...

MRT ...

10692 14 + 73182485 - 73182592 1 108

CTG ...

LHQ ...

10695 14 + 25649774 - 25649854 1 81

CTG ...

LDK ...

10698 14 + 26646668 - 26646703 1 36

ATG ...

MLL ...

10700 14 - 73366317 - 73366409 1 93

TTG ...

LRK ...

10702 1 + 107524595 - 107524825 1 231

ATG ...

MKM ...

10704 14 + 64767619 - 64767666 1 48

CTG ...

LRM ...

10707 1 - 55016412 - 55016441 1 30

ATG ...

MNT ...

10710 14 - 121294191 - 121294271 1 81

CTG ...

LDL ...

10713 14 + 28513342 - 28513395 1 54

CTG ...

LQH ...

10716 14 + 122146672 - 122146788 1 117

ATG ...

MSG ...

10719 14 + 20688779 - 20688835 1 57

ATG ...

MLM ...

10722 14 - 57100103 - 57100213 1 111

CTG ...

LLH ...

10725 14 - 45301850 - 45301891 1 42

GTG ...

VSK ...

10728 14 - 31187055 - 31187090 1 36

ATG ...

MWT ...

10731 14 - 73368291 - 73368383 1 93

TTG ...

LVH ...

10733 1 - 86356948 - 86357034 1 87

CTG ...

LLL ...

10735 14 + 63135682 - 63135726 1 45

TTG ...

LDR ...

10738 14 + 28513336 - 28513395 1 60

ATG ...

MEL ...

10740 14 - 73366317 - 73366364 1 48

TTG ...

LRT ...

10742 14 - 45301850 - 45301882 1 33

CTG ...

LSD ...

10744 14 + 25699550 - 25699597 1 48

GTG ...

VGR ...

10747 14 - 73364544 - 73364591 1 48

GTG ...

VSR ...

10749 14 - 57124666 - 57124734 1 69

GTG ...

VDH ...

10752 14 + 63134020 - 63134058 1 39

CTG ...

LSW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5