Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10517 13 + 92365724 - 92365753 1 30

TTG ...

LNN ...

10520 13 + 75840132 - 75847188 2 63

GTG ...

VRF ...

10522 13 + 75840102 - 75847188 2 93

TTG ...

LWT ...

10524 13 + 75840003 - 75847188 2 192

CTG ...

LGR ...

10526 13 + 69621638 - 69623195 2 75

CTG ...

LEE ...

10529 13 + 100654247 - 100655038 2 42

CTG ...

LKY ...

10532 13 - 54606673 - 54611125 2 66

CTG ...

LPP ...

10534 1 - 125397166 - 125397216 1 51

GTG ...

VVQ ...

10537 13 + 38151759 - 38164784 2 57

CTG ...

LHR ...

10539 1 + 193304452 - 193304565 1 114

GTG ...

VCP ...

10541 13 - 54606673 - 54611161 2 102

TTG ...

LLA ...

10543 13 + 38172864 - 38175068 3 96

TTG ...

LGT ...

10545 13 + 38178507 - 38179099 2 105

GTG ...

VTR ...

10547 13 - 6587095 - 6588508 2 39

TTG ...

LIS ...

10550 13 - 55499203 - 55504710 2 72

ATG ...

MMC ...

10552 13 - 56083285 - 56084347 3 162

ATG ...

MLS ...

10555 13 - 54594020 - 54598746 2 48

TTG ...

LRR ...

10557 13 - 74736792 - 74736994 2 102

ATG ...

MPC ...

10559 13 - 64368196 - 64369092 2 108

TTG ...

LIK ...

10561 13 - 56083285 - 56084332 3 147

GTG ...

VPQ ...

10563 13 - 64364098 - 64365329 3 228

CTG ...

LPG ...

10565 13 - 55320318 - 55320765 3 129

ATG ...

MFR ...

10567 13 - 55499203 - 55504698 2 60

ATG ...

MHP ...

10569 13 - 81689224 - 81694671 2 57

TTG ...

LNH ...

10572 13 - 64364160 - 64366541 3 222

CTG ...

LWG ...

10574 13 + 75761963 - 75762152 2 48

GTG ...

VRQ ...

10577 13 - 64364160 - 64365343 3 180

GTG ...

VFI ...

10579 13 - 64364098 - 64365374 3 273

CTG ...

LSC ...

10581 13 - 54594020 - 54598755 2 57

GTG ...

VNR ...

10583 13 - 55320318 - 55320508 2 63

GTG ...

VWM ...

10585 13 - 64364160 - 64366550 3 231

CTG ...

LWR ...

10587 13 - 34075454 - 34076186 2 84

TTG ...

LCS ...

10589 13 - 54606673 - 54611158 2 99

CTG ...

LAS ...

10591 13 - 74736792 - 74736982 2 90

CTG ...

LIS ...

10593 13 + 38181121 - 38182207 2 138

GTG ...

VYS ...

10595 13 - 64366554 - 64366911 2 132

ATG ...

MEV ...

10597 13 + 30708037 - 30708692 2 81

GTG ...

VPT ...

10599 13 + 110396952 - 110397556 2 129

TTG ...

LVW ...

10601 13 - 55499203 - 55504686 2 48

GTG ...

VPN ...

10603 1 + 106872337 - 106872402 1 66

TTG ...

LKL ...

10605 13 - 27558318 - 27559366 2 105

CTG ...

LKL ...

10607 13 - 74724789 - 74725446 2 156

ATG ...

MLL ...

10609 13 - 6587095 - 6588535 2 66

ATG ...

MLP ...

10611 13 - 6598756 - 6600677 3 153

TTG ...

LNV ...

10614 13 - 64368196 - 64369035 2 51

ATG ...

MAR ...

10616 1 - 135879929 - 135880012 1 84

ATG ...

MTA ...

10618 13 - 96482223 - 96483493 3 69

CTG ...

LTD ...

10621 13 - 56083285 - 56084344 3 159

TTG ...

LSV ...

10623 13 - 102767972 - 102769824 2 57

ATG ...

MCA ...

10625 13 - 55320318 - 55320535 2 90

TTG ...

LKH ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5