Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10408 13 + 30708685 - 30708753 1 69

ATG ...

MAE ...

10410 13 + 34026798 - 34026836 1 39

CTG ...

LCT ...

10413 1 - 75215622 - 75215744 1 123

GTG ...

VGE ...

10415 13 - 56084143 - 56084277 1 135

CTG ...

LEK ...

10417 13 - 6584619 - 6584669 1 51

TTG ...

LEP ...

10419 13 - 64368120 - 64368227 1 108

GTG ...

VEE ...

10421 13 - 74309723 - 74309761 1 39

ATG ...

MSS ...

10423 13 + 108267265 - 108267330 1 66

TTG ...

LLR ...

10425 13 + 3838170 - 3838232 1 63

TTG ...

LTR ...

10427 13 - 6602709 - 6602774 1 66

TTG ...

LQT ...

10429 13 + 74646522 - 74646551 1 30

CTG ...

LER ...

10432 13 - 3803885 - 3803965 1 81

CTG ...

LTA ...

10434 13 + 56614245 - 56614352 1 108

ATG ...

MYV ...

10436 13 - 94224968 - 94225000 1 33

TTG ...

LIP ...

10438 13 + 75840003 - 75840179 1 177

CTG ...

LGR ...

10440 13 - 6602709 - 6602753 1 45

TTG ...

LQS ...

10442 13 - 98755181 - 98755213 1 33

CTG ...

LKM ...

10445 13 - 34075454 - 34075522 1 69

GTG ...

VVQ ...

10447 13 - 3804044 - 3804145 1 102

TTG ...

LTR ...

10449 13 + 94837146 - 94837178 1 33

TTG ...

LPA ...

10452 13 + 38195112 - 38195201 1 90

CTG ...

LQA ...

10454 13 - 74704103 - 74704189 1 87

TTG ...

LMM ...

10456 13 - 6605703 - 6605747 1 45

ATG ...

MDI ...

10458 13 - 58193473 - 58193508 1 36

TTG ...

LED ...

10461 13 - 34075432 - 34075506 1 75

CTG ...

LGK ...

10463 13 - 74334294 - 74334335 1 42

TTG ...

LPG ...

10466 13 - 114455855 - 114455896 1 42

GTG ...

VRT ...

10468 13 - 3803993 - 3804028 1 36

ATG ...

MET ...

10470 13 - 14610515 - 14610592 1 78

TTG ...

LRL ...

10473 13 - 3803993 - 3804037 1 45

TTG ...

LTK ...

10475 13 + 3837927 - 3838004 1 78

CTG ...

LSS ...

10477 13 + 119699801 - 119699884 1 84

ATG ...

MLE ...

10479 13 - 6602709 - 6602789 1 81

CTG ...

LFE ...

10481 13 - 96652689 - 96652724 1 36

TTG ...

LDR ...

10484 13 - 74309719 - 74309769 1 51

CTG ...

LAE ...

10486 13 - 56084192 - 56084332 1 141

GTG ...

VPQ ...

10488 13 + 55593260 - 55593328 1 69

GTG ...

VAC ...

10490 13 + 3837969 - 3838004 1 36

ATG ...

MAI ...

10492 13 - 3803993 - 3804043 1 51

ATG ...

MKL ...

10494 13 - 54599040 - 54599081 1 42

GTG ...

VER ...

10496 13 - 30540970 - 30541086 1 117

CTG ...

LIS ...

10498 13 - 54598714 - 54598755 1 42

GTG ...

VNR ...

10500 13 + 47220493 - 47220558 1 66

GTG ...

VPE ...

10503 1 - 51824093 - 51824164 1 72

GTG ...

VRK ...

10505 13 + 3837954 - 3838004 1 51

TTG ...

LTR ...

10507 13 - 55504654 - 55504698 1 45

ATG ...

MHP ...

10509 13 + 5864835 - 5864873 1 39

TTG ...

LTA ...

10511 13 + 38191686 - 38191790 1 105

ATG ...

MTM ...

10513 13 - 96652689 - 96652754 1 66

TTG ...

LHR ...

10515 13 - 34075400 - 34075435 1 36

CTG ...

LKA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5