Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10297 1 - 155792190 - 155792279 1 90

ATG ...

MIS ...

10299 13 + 38168702 - 38168788 1 87

TTG ...

LPE ...

10301 13 - 34075454 - 34075519 1 66

GTG ...

VQE ...

10304 13 - 96666540 - 96666599 1 60

CTG ...

LYD ...

10307 13 - 114880955 - 114880996 1 42

CTG ...

LGS ...

10310 13 - 64369020 - 64369061 1 42

GTG ...

VEV ...

10312 1 + 107590201 - 107590248 1 48

CTG ...

LDR ...

10314 13 + 30708037 - 30708105 1 69

GTG ...

VPT ...

10317 13 + 41008089 - 41008127 1 39

CTG ...

LGC ...

10320 13 - 96658579 - 96658650 1 72

CTG ...

LEL ...

10322 13 - 74736929 - 74736982 1 54

CTG ...

LIS ...

10324 13 - 64369020 - 64369070 1 51

GTG ...

VAP ...

10326 13 + 56614251 - 56614352 1 102

GTG ...

VLC ...

10328 13 + 108270647 - 108270676 1 30

CTG ...

LGY ...

10330 13 + 3838155 - 3838232 1 78

CTG ...

LCS ...

10332 13 - 32845672 - 32845728 1 57

GTG ...

VGG ...

10335 13 - 96658579 - 96658617 1 39

ATG ...

MKN ...

10337 1 + 106946636 - 106946710 1 75

CTG ...

LPS ...

10339 13 - 3804044 - 3804100 1 57

CTG ...

LSC ...

10341 13 + 75839989 - 75840123 1 135

CTG ...

LQD ...

10343 13 + 38191573 - 38191626 1 54

GTG ...

VLR ...

10345 13 - 97177897 - 97177953 1 57

TTG ...

LVL ...

10348 13 - 114455686 - 114455787 1 102

GTG ...

VWA ...

10351 1 + 106949594 - 106949740 1 147

CTG ...

LPL ...

10353 13 - 74725360 - 74725446 1 87

ATG ...

MLL ...

10355 13 + 47067536 - 47067565 1 30

TTG ...

LSM ...

10358 13 - 27559280 - 27559366 1 87

CTG ...

LKL ...

10361 13 + 119705090 - 119705155 1 66

GTG ...

VTL ...

10363 13 + 56626149 - 56626184 1 36

TTG ...

LKS ...

10365 13 - 64365191 - 64365313 1 123

ATG ...

MNP ...

10367 13 + 119705108 - 119705155 1 48

TTG ...

LTR ...

10369 13 - 3804044 - 3804136 1 93

ATG ...

MGM ...

10371 13 + 3556479 - 3556520 1 42

CTG ...

LAI ...

10373 13 + 38191755 - 38191790 1 36

CTG ...

LRK ...

10375 13 + 55596939 - 55596971 1 33

CTG ...

LAD ...

10377 13 + 55596894 - 55596971 1 78

ATG ...

MVV ...

10379 13 + 38191623 - 38191790 1 168

ATG ...

MRS ...

10381 1 - 75217215 - 75217271 1 57

CTG ...

LEL ...

10383 13 + 5861745 - 5861846 1 102

ATG ...

MCS ...

10385 13 - 94224968 - 94225003 1 36

GTG ...

VLI ...

10388 13 - 96658818 - 96658985 1 168

GTG ...

VTS ...

10390 13 + 41008083 - 41008127 1 45

CTG ...

LHL ...

10392 13 + 38195006 - 38195068 1 63

GTG ...

VRS ...

10394 1 - 153150736 - 153150792 1 57

GTG ...

VFS ...

10396 13 + 38190396 - 38190461 1 66

CTG ...

LRT ...

10398 13 - 74725360 - 74725443 1 84

CTG ...

LLK ...

10400 13 + 3838182 - 3838232 1 51

GTG ...

VMA ...

10402 1 - 54988070 - 54988102 1 33

GTG ...

VFT ...

10404 13 - 64368120 - 64368212 1 93

ATG ...

MGE ...

10406 13 + 108282611 - 108282649 1 39

GTG ...

VLT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5