Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10177 13 - 54598752 - 54598805 1 54

GTG ...

VAG ...

10180 1 - 86356416 - 86356454 1 39

CTG ...

LLK ...

10182 13 + 5861784 - 5861846 1 63

TTG ...

LCT ...

10185 13 - 64366864 - 64366935 1 72

TTG ...

LLS ...

10187 13 - 56084192 - 56084344 1 153

TTG ...

LSV ...

10189 13 - 102769765 - 102769824 1 60

ATG ...

MCA ...

10192 13 - 34128851 - 34128916 1 66

CTG ...

LDH ...

10195 13 + 75840034 - 75840123 1 90

CTG ...

LPL ...

10198 13 + 56626104 - 56626184 1 81

TTG ...

LTR ...

10201 13 - 74725360 - 74725440 1 81

TTG ...

LKP ...

10204 13 - 6603075 - 6603113 1 39

TTG ...

LPL ...

10207 13 - 6625132 - 6625179 1 48

TTG ...

LWK ...

10209 13 - 3804044 - 3804187 1 144

CTG ...

LRS ...

10211 13 + 3556491 - 3556520 1 30

TTG ...

LHC ...

10213 13 - 56084192 - 56084293 1 102

TTG ...

LPR ...

10215 13 - 34128851 - 34128907 1 57

TTG ...

LGR ...

10217 13 - 3884153 - 3884185 1 33

GTG ...

VYR ...

10220 13 - 6603412 - 6603456 1 45

ATG ...

MYR ...

10222 13 + 38191719 - 38191790 1 72

GTG ...

VRR ...

10224 1 - 51779677 - 51779709 1 33

CTG ...

LLQ ...

10226 13 + 55596897 - 55596971 1 75

GTG ...

VVH ...

10229 13 - 64367877 - 64367906 1 30

CTG ...

LWT ...

10231 13 + 56632102 - 56632134 1 33

TTG ...

LGP ...

10233 13 + 13500542 - 13500583 1 42

CTG ...

LER ...

10236 13 + 119699804 - 119699884 1 81

CTG ...

LES ...

10239 13 + 56614254 - 56614352 1 99

CTG ...

LCR ...

10241 13 - 74309719 - 74309787 1 69

GTG ...

VEV ...

10244 13 + 119699948 - 119699986 1 39

TTG ...

LEQ ...

10246 13 + 75840132 - 75840179 1 48

GTG ...

VRF ...

10248 13 + 75840102 - 75840179 1 78

TTG ...

LWT ...

10250 13 + 75840043 - 75840123 1 81

CTG ...

LQK ...

10252 13 + 3838272 - 3838304 1 33

GTG ...

VWL ...

10255 13 + 3838164 - 3838232 1 69

ATG ...

MSL ...

10257 13 - 58128214 - 58128270 1 57

ATG ...

MCR ...

10260 13 + 5864854 - 5864919 1 66

GTG ...

VDQ ...

10262 13 - 96658818 - 96658940 1 123

CTG ...

LLV ...

10265 1 + 106881758 - 106881820 1 63

ATG ...

MKV ...

10267 13 - 55320318 - 55320374 1 57

ATG ...

MNS ...

10270 13 - 74736929 - 74736994 1 66

ATG ...

MPC ...

10272 1 + 55152726 - 55152806 1 81

CTG ...

LMS ...

10274 13 + 56614269 - 56614352 1 84

TTG ...

LAP ...

10276 13 - 54598714 - 54598746 1 33

TTG ...

LRR ...

10278 13 + 38187744 - 38187821 1 78

GTG ...

VGP ...

10280 13 - 98870236 - 98870316 1 81

ATG ...

MLL ...

10283 13 - 38518997 - 38519032 1 36

TTG ...

LKH ...

10286 13 + 108267256 - 108267330 1 75

ATG ...

MSI ...

10288 13 - 56084192 - 56084347 1 156

ATG ...

MLS ...

10290 13 - 74704103 - 74704183 1 81

ATG ...

MPW ...

10292 13 - 33918348 - 33918407 1 60

GTG ...

VDK ...

10295 13 - 6587048 - 6587104 1 57

GTG ...

VHL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5