Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

10041 12 - 51762546 - 51764091 2 72

CTG ...

LSL ...

10043 12 + 87266913 - 87268229 2 84

CTG ...

LAL ...

10046 12 + 8790796 - 8791339 2 120

CTG ...

LSS ...

10048 12 + 79218818 - 79221965 2 51

CTG ...

LCS ...

10051 12 - 3252659 - 3253315 2 102

GTG ...

VTW ...

10053 12 - 51762546 - 51764109 2 90

ATG ...

MMT ...

10055 12 + 111781949 - 111785302 2 126

CTG ...

LLS ...

10058 1 + 93499038 - 93499079 1 42

ATG ...

MSS ...

10060 12 + 87266919 - 87268229 2 78

CTG ...

LDR ...

10062 12 + 17278590 - 17278873 2 93

GTG ...

VKT ...

10064 12 - 51762546 - 51764070 2 51

ATG ...

MRM ...

10066 12 + 17278584 - 17278873 2 99

TTG ...

LTV ...

10068 12 + 104411377 - 104412345 2 36

GTG ...

VEE ...

10071 12 + 83724685 - 83728226 2 33

ATG ...

MAH ...

10073 12 + 17278627 - 17279583 3 138

GTG ...

VWT ...

10075 12 + 8790820 - 8791339 2 96

ATG ...

MEL ...

10077 12 - 51762546 - 51764064 2 45

ATG ...

MKM ...

10079 12 + 8790811 - 8791339 2 105

TTG ...

LSR ...

10081 12 + 8790784 - 8791339 2 132

GTG ...

VAA ...

10083 12 - 51762546 - 51764085 2 66

CTG ...

LTR ...

10085 12 + 17277242 - 17278648 2 198

TTG ...

LRQ ...

10088 12 + 8790757 - 8791339 2 159

CTG ...

LTI ...

10090 12 + 8706013 - 8707254 2 33

ATG ...

MER ...

10093 12 + 73941812 - 73941973 2 54

TTG ...

LLK ...

10095 12 + 17280407 - 17280615 2 105

ATG ...

MRG ...

10097 12 + 8709469 - 8710276 2 159

CTG ...

LLI ...

10099 12 - 87336152 - 87341568 2 39

GTG ...

VLQ ...

10101 12 + 17278569 - 17278873 2 114

TTG ...

LIR ...

10118 1 + 59704666 - 59704782 1 117

CTG ...

LQN ...

10120 13 - 64366864 - 64366911 1 48

ATG ...

MEV ...

10123 13 - 3803885 - 3803917 1 33

ATG ...

MAM ...

10126 13 + 3556374 - 3556430 1 57

TTG ...

LMK ...

10129 1 - 178331837 - 178331884 1 48

CTG ...

LGN ...

10131 13 + 38168720 - 38168788 1 69

CTG ...

LGR ...

10134 13 - 3804044 - 3804130 1 87

ATG ...

MAV ...

10136 13 - 30540970 - 30541032 1 63

TTG ...

LCA ...

10139 13 - 112883210 - 112883239 1 30

ATG ...

MIW ...

10142 13 + 38195507 - 38195536 1 30

ATG ...

MRS ...

10144 13 - 6587048 - 6587098 1 51

TTG ...

LTE ...

10147 13 + 108267199 - 108267330 1 132

TTG ...

LKT ...

10150 1 + 63178504 - 63178596 1 93

GTG ...

VEL ...

10152 13 - 6625132 - 6625194 1 63

ATG ...

MEA ...

10155 13 - 56084202 - 56084243 1 42

CTG ...

LFW ...

10158 13 + 110400158 - 110400220 1 63

CTG ...

LFV ...

10161 13 - 64368196 - 64368237 1 42

ATG ...

MRK ...

10163 13 - 24753413 - 24753445 1 33

TTG ...

LNK ...

10166 13 - 55504654 - 55504686 1 33

GTG ...

VPN ...

10169 13 + 38191692 - 38191790 1 99

ATG ...

MIS ...

10171 13 - 44982737 - 44982838 1 102

CTG ...

LGE ...

10174 13 - 53354177 - 53354206 1 30

ATG ...

MMW ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5