Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9937 12 - 80259982 - 80260038 1 57

CTG ...

LGS ...

9939 12 - 108875220 - 108875252 1 33

CTG ...

LTT ...

9941 1 + 86078598 - 86078825 1 228

GTG ...

VSD ...

9944 12 + 8790493 - 8790558 1 66

CTG ...

LLL ...

9946 12 - 87341528 - 87341620 1 93

CTG ...

LDP ...

9948 12 - 87346694 - 87346789 1 96

CTG ...

LSD ...

9950 12 + 17280407 - 17280466 1 60

ATG ...

MRG ...

9952 12 + 73585057 - 73585095 1 39

CTG ...

LPP ...

9955 12 + 83724685 - 83724720 1 36

ATG ...

MAH ...

9957 12 + 8790757 - 8790870 1 114

CTG ...

LTI ...

9959 12 + 8790811 - 8790870 1 60

TTG ...

LSR ...

9961 12 - 51764017 - 51764085 1 69

CTG ...

LTR ...

9963 12 + 73942274 - 73942327 1 54

GTG ...

VAL ...

9965 12 + 55410187 - 55410267 1 81

ATG ...

MAM ...

9967 12 + 8791310 - 8791339 1 30

CTG ...

LGR ...

9969 12 + 8709472 - 8710276 2 156

CTG ...

LIN ...

9971 12 + 17278636 - 17279583 3 129

CTG ...

LQK ...

9973 12 + 17278578 - 17278873 2 105

ATG ...

MSL ...

9975 1 - 181961750 - 181961782 1 33

TTG ...

LWA ...

9977 12 + 73941779 - 73941973 2 87

ATG ...

MYS ...

9979 12 - 55489930 - 55490449 2 84

ATG ...

MRR ...

9981 12 - 80171800 - 80173153 3 267

CTG ...

LMS ...

9983 12 + 8790682 - 8791339 2 234

CTG ...

LSH ...

9985 12 + 110662624 - 110662887 2 111

TTG ...

LEN ...

9987 12 - 87350359 - 87355603 2 105

CTG ...

LDH ...

9990 12 + 83724676 - 83728226 2 42

ATG ...

MDR ...

9992 12 - 80209389 - 80260048 2 147

CTG ...

LKR ...

9994 12 + 17280425 - 17280615 2 87

CTG ...

LCR ...

9996 12 + 8790826 - 8791339 2 90

CTG ...

LPI ...

9998 12 + 17278624 - 17279583 3 141

GTG ...

VVW ...

10000 12 - 51762546 - 51764058 2 39

ATG ...

MTI ...

10002 12 + 8790748 - 8791339 2 168

CTG ...

LVN ...

10004 12 + 8790724 - 8791339 2 192

ATG ...

MRP ...

10006 12 - 87309901 - 87312733 2 156

CTG ...

LSA ...

10008 12 - 51762546 - 51764106 2 87

ATG ...

MTR ...

10010 12 - 80209389 - 80260081 2 180

ATG ...

MIP ...

10012 12 - 102399985 - 102400178 2 51

GTG ...

VTG ...

10014 12 - 80171800 - 80173150 3 264

ATG ...

MSR ...

10016 12 + 8790775 - 8791339 2 141

GTG ...

VWR ...

10018 12 - 80205078 - 80209459 2 105

GTG ...

VQL ...

10020 12 + 8790715 - 8791339 2 201

CTG ...

LAS ...

10022 12 - 87350359 - 87355621 2 123

TTG ...

LDL ...

10024 12 - 80171800 - 80173171 3 285

ATG ...

MTR ...

10026 12 - 55489930 - 55490437 2 72

ATG ...

MTR ...

10028 12 - 87350359 - 87355615 2 117

TTG ...

LRG ...

10030 12 + 17278560 - 17278873 2 123

ATG ...

MTP ...

10032 12 - 80205078 - 80209462 2 108

CTG ...

LVQ ...

10034 1 + 107606940 - 107606978 1 39

ATG ...

MRS ...

10037 12 - 51888980 - 51889594 2 30

GTG ...

VIR ...

10039 12 + 73941815 - 73941973 2 51

CTG ...

LKT ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5