Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9584 11 + 53534589 - 53534962 2 48

ATG ...

MLW ...

9586 11 - 55399296 - 55405205 3 177

CTG ...

LLP ...

9588 11 + 20215671 - 20218876 2 96

TTG ...

LES ...

9590 11 - 59185301 - 59185999 2 90

TTG ...

LQQ ...

9592 11 + 76202220 - 76205307 3 174

ATG ...

MDG ...

9594 11 - 33156996 - 33159973 2 93

ATG ...

MMR ...

9596 11 + 94940573 - 94940760 2 69

GTG ...

VSV ...

9598 11 - 55399296 - 55402088 3 168

CTG ...

LCL ...

9600 11 - 99000753 - 99001021 2 147

CTG ...

LTK ...

9602 11 + 48801799 - 48802338 2 102

CTG ...

LGR ...

9604 11 + 75620330 - 75625468 2 51

ATG ...

MTF ...

9609 12 + 8790379 - 8790447 1 69

CTG ...

LQV ...

9612 12 - 87309901 - 87309948 1 48

CTG ...

LDR ...

9615 12 - 101771304 - 101771357 1 54

GTG ...

VCN ...

9618 12 - 80172959 - 80173138 1 180

TTG ...

LGG ...

9621 12 + 8790682 - 8790870 1 189

CTG ...

LSH ...

9624 12 + 55407496 - 55407567 1 72

GTG ...

VDL ...

9627 1 + 172505200 - 172505331 1 132

TTG ...

LRS ...

9629 1 - 135877067 - 135877141 1 75

CTG ...

LQR ...

9631 1 - 128368400 - 128368444 1 45

ATG ...

MIQ ...

9633 12 + 110657135 - 110657170 1 36

ATG ...

MMP ...

9636 12 - 108862799 - 108862837 1 39

TTG ...

LKM ...

9639 1 + 106953757 - 106953849 1 93

CTG ...

LFT ...

9641 12 + 100206099 - 100206143 1 45

ATG ...

MGM ...

9644 12 - 104037861 - 104037905 1 45

ATG ...

MCM ...

9647 12 + 69372976 - 69373119 1 144

GTG ...

VGC ...

9650 1 + 45328440 - 45328484 1 45

ATG ...

MDA ...

9652 12 - 87341528 - 87341638 1 111

GTG ...

VVD ...

9655 12 + 24575989 - 24576090 1 102

CTG ...

LEV ...

9658 12 + 113144839 - 113144871 1 33

TTG ...

LLW ...

9661 12 + 69372981 - 69373046 1 66

ATG ...

MWA ...

9663 12 + 71944090 - 71944125 1 36

ATG ...

MYS ...

9666 12 + 113144457 - 113144492 1 36

CTG ...

LLQ ...

9669 1 - 75215622 - 75215687 1 66

CTG ...

LEK ...

9671 12 - 104037861 - 104037896 1 36

ATG ...

MRT ...

9673 12 - 80172959 - 80173123 1 165

TTG ...

LRC ...

9675 12 - 87341528 - 87341692 1 165

TTG ...

LYL ...

9677 12 + 8706013 - 8706045 1 33

ATG ...

MER ...

9680 12 + 8790826 - 8790870 1 45

CTG ...

LPI ...

9682 12 - 51764017 - 51764058 1 42

ATG ...

MTI ...

9685 12 + 110657093 - 110657134 1 42

ATG ...

MNI ...

9687 12 + 80946697 - 80946732 1 36

TTG ...

LKR ...

9690 12 - 3256872 - 3256928 1 57

ATG ...

MTS ...

9693 12 - 51764017 - 51764109 1 93

ATG ...

MMT ...

9695 12 - 102423598 - 102423723 1 126

CTG ...

LES ...

9698 12 - 31333430 - 31333474 1 45

TTG ...

LDI ...

9701 12 - 51764017 - 51764070 1 54

ATG ...

MRM ...

9703 12 + 113153339 - 113153374 1 36

ATG ...

MWK ...

9706 12 - 87368927 - 87368971 1 45

TTG ...

LKS ...

9709 12 + 83664058 - 83664297 1 240

GTG ...

VKG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5