Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9474 11 + 75756963 - 75759341 2 111

TTG ...

LLS ...

9476 1 + 171356785 - 171356832 1 48

CTG ...

LSK ...

9479 11 + 23000923 - 23001431 2 102

TTG ...

LKE ...

9481 11 - 116178286 - 116178695 2 39

GTG ...

VSC ...

9484 11 + 29736493 - 29742029 3 108

CTG ...

LKA ...

9486 11 + 6348272 - 6349123 3 267

CTG ...

LPL ...

9489 11 + 16867240 - 16868110 2 63

GTG ...

VIQ ...

9491 11 + 70724940 - 70725151 2 117

CTG ...

LEL ...

9493 11 + 29741502 - 29742029 3 147

CTG ...

LIS ...

9496 11 - 78228759 - 78229012 2 72

ATG ...

MWN ...

9498 11 - 51604507 - 51604708 2 75

CTG ...

LKP ...

9500 11 - 30129623 - 30135994 2 93

ATG ...

MGT ...

9502 11 + 9119411 - 9125647 2 54

CTG ...

LEA ...

9504 11 + 16867268 - 16868168 2 93

CTG ...

LGR ...

9506 11 - 100903758 - 100904997 2 96

CTG ...

LMK ...

9509 11 - 100205076 - 100205714 3 123

CTG ...

LFY ...

9511 11 - 100493554 - 100494079 2 261

TTG ...

LGA ...

9513 11 - 98438103 - 98438292 2 99

ATG ...

MDS ...

9515 11 - 33156996 - 33159958 2 78

ATG ...

MRT ...

9517 11 - 98438103 - 98438670 3 144

TTG ...

LSR ...

9519 11 - 76808860 - 76811718 2 42

ATG ...

MDM ...

9521 11 - 93959485 - 93960707 2 69

CTG ...

LGP ...

9523 11 - 100204328 - 100204491 2 69

GTG ...

VRF ...

9525 11 - 33156996 - 33159961 2 81

ATG ...

MMR ...

9527 11 - 100903758 - 100904994 2 93

ATG ...

MKS ...

9529 11 - 98438103 - 98438301 2 108

TTG ...

LRS ...

9531 11 + 53534592 - 53534962 2 45

CTG ...

LWA ...

9533 11 - 101102078 - 101103921 3 45

GTG ...

VPR ...

9536 11 - 100477244 - 100478446 4 291

ATG ...

MIN ...

9538 11 - 59185301 - 59185975 2 66

ATG ...

MLS ...

9540 11 - 93959396 - 93960792 3 243

CTG ...

LSL ...

9542 1 - 153154369 - 153154473 1 105

GTG ...

VTQ ...

9544 11 - 6624263 - 6625995 3 117

CTG ...

LAS ...

9547 1 + 106949188 - 106949259 1 72

GTG ...

VKA ...

9549 11 - 55399296 - 55402025 2 105

TTG ...

LPP ...

9551 11 - 55399296 - 55405274 3 246

ATG ...

MAR ...

9553 11 - 100205076 - 100205636 2 45

ATG ...

MTS ...

9555 11 - 50300960 - 50301800 2 138

CTG ...

LSI ...

9557 11 - 55399296 - 55405325 4 297

CTG ...

LTL ...

9559 11 - 69917725 - 69917993 2 81

CTG ...

LGR ...

9561 11 - 100905045 - 100905342 3 153

GTG ...

VVS ...

9563 11 + 29740995 - 29741536 2 93

GTG ...

VGI ...

9566 11 + 22993273 - 22994298 2 48

CTG ...

LML ...

9568 11 + 50379575 - 50380851 3 219

TTG ...

LAL ...

9571 11 - 97162681 - 97163576 3 225

ATG ...

MDA ...

9573 1 - 86356526 - 86356627 1 102

ATG ...

MKM ...

9575 11 + 29736367 - 29742029 3 234

TTG ...

LES ...

9577 11 + 52243727 - 52244996 2 48

TTG ...

LTK ...

9580 11 + 50379581 - 50380851 3 213

TTG ...

LKK ...

9582 11 + 120469043 - 120469638 2 90

CTG ...

LGV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5