Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9361 11 + 69992692 - 69994524 2 75

CTG ...

LYQ ...

9364 11 - 99000753 - 99001030 2 156

CTG ...

LWY ...

9367 11 + 75756990 - 75759341 2 84

ATG ...

MKF ...

9369 11 + 29736454 - 29742029 3 147

TTG ...

LRR ...

9372 11 + 98666547 - 98669647 2 114

CTG ...

LRV ...

9374 11 + 53534601 - 53534962 2 36

TTG ...

LAI ...

9376 11 - 60404458 - 60405785 2 45

CTG ...

LRK ...

9379 11 - 51601469 - 51601913 3 174

CTG ...

LCP ...

9382 11 - 100203286 - 100204026 4 195

TTG ...

LQP ...

9384 1 - 51473002 - 51473046 1 45

GTG ...

VSQ ...

9386 11 - 120563641 - 120563823 2 96

CTG ...

LNR ...

9389 1 - 54987930 - 54987986 1 57

CTG ...

LRV ...

9391 11 - 33156996 - 33159970 2 90

ATG ...

MRT ...

9393 11 - 100247651 - 100247932 2 144

TTG ...

LPP ...

9395 11 - 100478036 - 100478370 2 99

TTG ...

LRL ...

9397 11 + 43444800 - 43445185 2 33

CTG ...

LYW ...

9400 11 - 100205076 - 100205654 2 63

ATG ...

MPA ...

9402 1 - 184822331 - 184822390 1 60

GTG ...

VDP ...

9405 11 - 50300960 - 50301779 2 117

ATG ...

MQR ...

9407 11 - 99000753 - 99000997 2 123

CTG ...

LCK ...

9409 11 - 100247651 - 100247890 2 102

ATG ...

MPG ...

9411 11 - 69917725 - 69917981 2 69

ATG ...

MKI ...

9413 1 - 86356526 - 86356654 1 129

CTG ...

LRR ...

9415 11 - 100493554 - 100494064 2 246

CTG ...

LDA ...

9417 11 - 50300960 - 50301782 2 120

CTG ...

LMQ ...

9419 11 - 59185301 - 59185972 2 63

CTG ...

LSS ...

9421 11 - 100259301 - 100259728 2 63

ATG ...

MLV ...

9423 11 + 60943233 - 60943505 2 51

ATG ...

MLR ...

9426 11 + 60950058 - 60951795 3 81

GTG ...

VPK ...

9428 11 - 50308915 - 50310404 2 48

ATG ...

MTL ...

9430 11 + 20218852 - 20223191 2 165

GTG ...

VDF ...

9433 11 - 55399296 - 55405262 3 234

GTG ...

VSW ...

9435 11 - 100247651 - 100247872 2 84

ATG ...

MTS ...

9437 1 - 9942614 - 9942652 1 39

GTG ...

VIE ...

9440 1 - 86356041 - 86356085 1 45

TTG ...

LLL ...

9442 11 - 100205076 - 100205642 2 51

CTG ...

LPM ...

9444 11 + 29736454 - 29741738 3 159

TTG ...

LRR ...

9446 11 - 100259301 - 100259797 3 132

TTG ...

LLC ...

9448 1 - 84725388 - 84725441 1 54

TTG ...

LFL ...

9451 11 + 61701753 - 61702531 2 90

GTG ...

VWL ...

9453 11 - 100493554 - 100494040 2 222

CTG ...

LVE ...

9455 11 - 55395858 - 55398683 2 228

ATG ...

MRM ...

9457 11 + 72446053 - 72446199 2 51

CTG ...

LGP ...

9460 1 - 75217215 - 75217277 1 63

GTG ...

VKL ...

9462 11 - 120822195 - 120822758 2 78

GTG ...

VWT ...

9464 11 - 100259301 - 100259734 2 69

TTG ...

LTM ...

9466 11 + 29736493 - 29741738 3 120

CTG ...

LKF ...

9468 11 - 93959396 - 93960804 3 255

CTG ...

LYL ...

9470 11 - 100898661 - 100898818 2 66

CTG ...

LGM ...

9472 11 + 29736367 - 29741738 3 246

TTG ...

LES ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5