Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9253 11 - 55395590 - 55395842 2 66

TTG ...

LPW ...

9256 11 - 120822195 - 120822740 2 60

ATG ...

MMT ...

9258 11 + 60464176 - 60464884 2 99

GTG ...

VGV ...

9260 11 - 120418318 - 120419109 2 63

ATG ...

MVP ...

9263 11 - 55399296 - 55402082 3 162

TTG ...

LAH ...

9265 11 + 51789243 - 51791342 2 102

TTG ...

LEI ...

9267 11 - 100259301 - 100259773 2 108

TTG ...

LWP ...

9269 1 + 185420171 - 185420224 1 54

CTG ...

LSV ...

9272 11 - 100259301 - 100259755 2 90

ATG ...

MPA ...

9274 11 - 100247651 - 100247896 2 108

TTG ...

LTM ...

9276 11 - 21564157 - 21565844 2 81

GTG ...

VPF ...

9278 11 - 100205076 - 100205675 2 84

ATG ...

MSS ...

9280 11 + 60464134 - 60464884 2 141

TTG ...

LRY ...

9282 11 - 53264971 - 53265935 2 183

GTG ...

VSE ...

9284 1 + 106955371 - 106955412 1 42

TTG ...

LAL ...

9286 11 + 29736433 - 29741738 3 180

GTG ...

VNS ...

9288 11 + 88048014 - 88048554 2 84

TTG ...

LSS ...

9291 11 + 48801820 - 48802338 2 81

CTG ...

LGS ...

9293 11 - 100477244 - 100478389 3 234

GTG ...

VDG ...

9295 11 - 55395858 - 55398659 2 204

CTG ...

LET ...

9297 1 + 134149384 - 134149458 1 75

CTG ...

LEG ...

9299 11 - 98438103 - 98438262 2 69

ATG ...

MEG ...

9301 1 + 45328449 - 45328484 1 36

ATG ...

MEK ...

9303 11 - 100259301 - 100259824 3 159

TTG ...

LTH ...

9305 11 - 93959396 - 93960786 3 237

TTG ...

LEV ...

9307 11 - 97162681 - 97163531 3 180

GTG ...

VFV ...

9309 11 + 48804229 - 48805569 2 93

ATG ...

MPC ...

9311 11 - 53266040 - 53267042 2 87

CTG ...

LWT ...

9314 11 - 100380685 - 100381719 2 48

CTG ...

LTA ...

9316 11 - 100477244 - 100478362 3 207

GTG ...

VDM ...

9318 11 - 78228759 - 78229033 2 93

TTG ...

LPS ...

9320 11 + 53408468 - 53409351 2 87

TTG ...

LPE ...

9323 11 + 50379575 - 50379972 2 201

TTG ...

LAL ...

9326 11 - 100477244 - 100478042 2 123

GTG ...

VLG ...

9328 11 - 69917725 - 69918005 2 93

TTG ...

LTF ...

9330 1 - 178332143 - 178332343 1 201

ATG ...

MKL ...

9332 11 + 60464197 - 60464884 2 78

CTG ...

LHL ...

9334 11 - 100247651 - 100247875 2 87

CTG ...

LMT ...

9336 11 + 48800557 - 48801880 2 234

CTG ...

LSA ...

9338 11 - 100493554 - 100493953 2 135

ATG ...

MNS ...

9340 11 - 69747277 - 69747409 2 36

CTG ...

LLL ...

9342 1 - 162705524 - 162705592 1 69

TTG ...

LVS ...

9345 11 - 100259301 - 100259710 2 45

ATG ...

MTS ...

9347 11 - 93959485 - 93960737 2 99

TTG ...

LER ...

9349 11 + 53534589 - 53534962 2 54

ATG ...

MLW ...

9351 11 - 98438103 - 98438676 3 150

TTG ...

LRL ...

9353 11 - 99387048 - 99387255 2 102

ATG ...

MLK ...

9355 11 - 100257856 - 100258473 2 78

GTG ...

VIS ...

9357 11 + 22993270 - 22994298 2 51

TTG ...

LLM ...

9359 11 - 53264971 - 53266025 2 273

CTG ...

LEK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5