Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9136 11 - 100260829 - 100260882 1 54

CTG ...

LPT ...

9138 11 - 46162024 - 46162053 1 30

CTG ...

LSD ...

9141 11 + 53534589 - 53534678 1 90

ATG ...

MLW ...

9144 11 - 20094394 - 20094429 1 36

ATG ...

MRQ ...

9146 11 + 5026271 - 5026318 1 48

GTG ...

VRI ...

9148 1 - 86356526 - 86356606 1 81

ATG ...

MMR ...

9150 11 + 94213725 - 94213832 1 108

GTG ...

VKS ...

9152 1 + 171462874 - 171462903 1 30

CTG ...

LVC ...

9155 1 + 55152711 - 55152806 1 96

GTG ...

VMK ...

9158 11 - 97173115 - 97173267 1 153

ATG ...

MTT ...

9160 11 + 94940719 - 94940760 1 42

GTG ...

VLV ...

9162 1 + 106949152 - 106949259 1 108

ATG ...

MNT ...

9164 11 - 103926144 - 103926182 1 39

ATG ...

MGW ...

9167 11 + 75620330 - 75620380 1 51

ATG ...

MTF ...

9170 11 + 50379581 - 50379972 2 195

TTG ...

LKK ...

9173 1 - 71645666 - 71645698 1 33

ATG ...

MQR ...

9175 11 + 20215665 - 20218876 2 102

CTG ...

LGL ...

9177 11 - 100493554 - 100494037 2 219

GTG ...

VEC ...

9180 11 - 100905045 - 100905339 3 150

GTG ...

VSP ...

9182 11 - 100204328 - 100204482 2 60

CTG ...

LSS ...

9184 11 - 55395858 - 55398677 2 222

ATG ...

MRS ...

9186 11 - 101460609 - 101462304 3 117

TTG ...

LSL ...

9189 1 - 86357068 - 86357139 1 72

ATG ...

MKR ...

9191 11 - 100477244 - 100478395 3 240

CTG ...

LNV ...

9194 11 - 120822195 - 120822764 2 84

TTG ...

LVV ...

9196 11 - 93959396 - 93960795 3 246

CTG ...

LLS ...

9198 11 + 20215656 - 20218876 2 111

TTG ...

LAI ...

9200 11 - 100205076 - 100205723 3 132

ATG ...

MAF ...

9202 11 - 100477244 - 100478422 4 267

TTG ...

LPS ...

9204 11 - 50311722 - 50325513 3 84

GTG ...

VVP ...

9207 11 - 100205076 - 100205762 3 171

GTG ...

VTS ...

9209 11 - 50298227 - 50299148 2 30

CTG ...

LLM ...

9211 11 - 100247651 - 100247917 2 129

ATG ...

MHS ...

9213 11 + 94951237 - 94951593 2 228

CTG ...

LAT ...

9215 11 - 100903758 - 100904982 2 81

CTG ...

LTG ...

9217 11 - 69917725 - 69917948 2 36

ATG ...

MSP ...

9220 11 - 100905284 - 100905628 2 51

TTG ...

LIS ...

9222 1 - 178331837 - 178331866 1 30

TTG ...

LEQ ...

9224 11 - 76808860 - 76811712 2 36

ATG ...

MKS ...

9227 11 - 59185301 - 59185981 2 72

TTG ...

LSM ...

9230 11 - 100205076 - 100205681 2 90

ATG ...

MPM ...

9232 11 - 97162681 - 97163522 3 171

TTG ...

LHR ...

9234 11 + 53534592 - 53534962 2 51

CTG ...

LWA ...

9237 11 + 22993276 - 22994298 2 45

ATG ...

MLL ...

9239 11 + 48800511 - 48801699 2 99

ATG ...

MGN ...

9242 11 + 29736397 - 29741738 3 216

TTG ...

LVQ ...

9245 11 - 100205076 - 100205774 3 183

GTG ...

VQA ...

9247 11 - 120822195 - 120822761 2 81

GTG ...

VVW ...

9249 1 - 75217215 - 75217256 1 42

ATG ...

MCL ...

9251 11 + 16867265 - 16868168 2 96

CTG ...

LLG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5