Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9028 11 + 69169232 - 69169381 1 150

TTG ...

LDA ...

9030 11 + 3970608 - 3970688 1 81

TTG ...

LVP ...

9032 11 - 100247579 - 100247629 1 51

CTG ...

LTW ...

9034 11 - 53268551 - 53268619 1 69

CTG ...

LVS ...

9036 11 + 102434451 - 102434513 1 63

ATG ...

MIL ...

9039 11 - 51604655 - 51604708 1 54

CTG ...

LKP ...

9042 11 - 86707564 - 86707614 1 51

TTG ...

LYR ...

9044 11 + 76205326 - 76205394 1 69

CTG ...

LRT ...

9046 11 + 77692118 - 77692192 1 75

CTG ...

LEE ...

9048 11 - 106251153 - 106251257 1 105

GTG ...

VSD ...

9050 1 - 120116389 - 120116520 1 132

CTG ...

LGR ...

9052 11 + 80431770 - 80431823 1 54

CTG ...

LGS ...

9054 11 - 93960657 - 93960707 1 51

CTG ...

LGP ...

9056 11 + 76205335 - 76205394 1 60

GTG ...

VPN ...

9058 11 - 99071313 - 99071468 1 156

CTG ...

LSS ...

9060 11 + 5521952 - 5521981 1 30

CTG ...

LLE ...

9063 11 + 94945375 - 94945416 1 42

CTG ...

LET ...

9065 11 + 48804211 - 48804300 1 90

ATG ...

MVG ...

9067 11 - 100204402 - 100204491 1 90

GTG ...

VRF ...

9069 11 - 75410799 - 75410999 1 201

CTG ...

LPL ...

9071 11 - 98438233 - 98438301 1 69

TTG ...

LRS ...

9074 11 - 60714563 - 60714646 1 84

GTG ...

VGW ...

9077 1 + 135831168 - 135831224 1 57

TTG ...

LRR ...

9080 11 + 48802313 - 48802432 1 120

GTG ...

VLS ...

9082 11 - 100247579 - 100247611 1 33

TTG ...

LKT ...

9084 11 - 86722273 - 86722317 1 45

CTG ...

LKN ...

9086 11 + 72208276 - 72208335 1 60

CTG ...

LKH ...

9088 1 + 66715964 - 66716023 1 60

CTG ...

LVE ...

9091 11 - 120809403 - 120809576 1 174

CTG ...

LAD ...

9093 1 + 151354720 - 151354764 1 45

CTG ...

LGE ...

9095 11 + 94213758 - 94213832 1 75

ATG ...

MKG ...

9097 11 + 48804214 - 48804300 1 87

GTG ...

VGT ...

9099 11 - 55405176 - 55405274 1 99

ATG ...

MAR ...

9101 11 + 75759342 - 75759398 1 57

GTG ...

VKK ...

9103 11 + 16878155 - 16878184 1 30

ATG ...

MLL ...

9105 1 - 135908872 - 135908970 1 99

ATG ...

MGW ...

9107 11 + 94946282 - 94946335 1 54

CTG ...

LVP ...

9109 11 + 94941566 - 94941595 1 30

GTG ...

VLL ...

9111 11 - 50301714 - 50301800 1 87

CTG ...

LSI ...

9113 11 - 120809403 - 120809525 1 123

CTG ...

LER ...

9115 11 - 50300960 - 50301052 1 93

ATG ...

MRI ...

9117 11 + 5796750 - 5796827 1 78

CTG ...

LCT ...

9119 11 + 22993273 - 22993323 1 51

CTG ...

LML ...

9121 11 - 99071313 - 99071453 1 141

GTG ...

VET ...

9123 11 - 70645780 - 70645815 1 36

GTG ...

VAL ...

9126 11 - 86717894 - 86718037 1 144

TTG ...

LLT ...

9128 1 - 71650558 - 71650617 1 60

CTG ...

LGL ...

9130 11 + 77692082 - 77692192 1 111

ATG ...

MVQ ...

9132 11 - 100372310 - 100372417 1 108

CTG ...

LDP ...

9134 11 - 100372348 - 100372386 1 39

ATG ...

MET ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5