Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8913 11 + 61703335 - 61703403 1 69

CTG ...

LMA ...

8915 11 - 97171569 - 97171670 1 102

TTG ...

LFE ...

8917 11 - 53429056 - 53429133 1 78

CTG ...

LIY ...

8919 11 + 94036594 - 94036632 1 39

TTG ...

LQS ...

8922 11 - 75410799 - 75411029 1 231

TTG ...

LTG ...

8924 11 - 20094206 - 20094403 1 198

TTG ...

LEV ...

8926 1 - 128348459 - 128348497 1 39

ATG ...

MRN ...

8929 11 + 94950866 - 94950907 1 42

CTG ...

LVW ...

8931 11 - 99387536 - 99387565 1 30

CTG ...

LTW ...

8933 11 - 75307203 - 75307241 1 39

CTG ...

LYV ...

8936 11 - 100584564 - 100584611 1 48

ATG ...

MPL ...

8938 11 + 9052821 - 9052862 1 42

CTG ...

LDQ ...

8941 11 + 52406986 - 52407063 1 78

GTG ...

VFQ ...

8943 11 - 99071313 - 99071444 1 132

CTG ...

LSG ...

8945 11 + 101034041 - 101034076 1 36

GTG ...

VPD ...

8947 11 - 100894712 - 100894801 1 90

CTG ...

LGP ...

8949 11 + 109660045 - 109660095 1 51

CTG ...

LTR ...

8951 11 + 98693662 - 98693715 1 54

CTG ...

LII ...

8953 11 - 69879544 - 69879573 1 30

CTG ...

LSS ...

8955 11 - 100381639 - 100381863 1 225

CTG ...

LSC ...

8958 11 + 101258948 - 101259022 1 75

CTG ...

LQA ...

8961 11 + 94634920 - 94634976 1 57

GTG ...

VAG ...

8964 11 + 20224390 - 20224422 1 33

GTG ...

VAA ...

8966 11 + 75751970 - 75752128 1 159

GTG ...

VIG ...

8968 1 + 45321958 - 45321996 1 39

ATG ...

MAM ...

8971 11 + 75751919 - 75752128 1 210

GTG ...

VEL ...

8973 11 - 90661752 - 90661784 1 33

CTG ...

LNN ...

8975 11 + 69169337 - 69169381 1 45

ATG ...

MHC ...

8978 11 - 20094206 - 20094343 1 138

CTG ...

LWD ...

8980 11 + 70553394 - 70553459 1 66

CTG ...

LAG ...

8983 11 - 20094349 - 20094378 1 30

ATG ...

MAS ...

8985 11 + 52403322 - 52403453 1 132

ATG ...

MAT ...

8987 1 + 135745301 - 135745387 1 87

ATG ...

MEK ...

8989 11 - 106784876 - 106784914 1 39

GTG ...

VDV ...

8992 11 + 76968619 - 76968831 1 213

GTG ...

VFG ...

8994 11 - 86725062 - 86725097 1 36

TTG ...

LEK ...

8996 11 - 106251167 - 106251268 1 102

ATG ...

MTS ...

8998 11 + 103060091 - 103060129 1 39

CTG ...

LAY ...

9001 11 + 75755557 - 75755595 1 39

ATG ...

MFS ...

9003 11 + 3970629 - 3970688 1 60

TTG ...

LFG ...

9006 11 - 99070641 - 99070679 1 39

CTG ...

LWN ...

9008 11 - 55401947 - 55402036 1 90

CTG ...

LPL ...

9010 11 - 94496205 - 94496333 1 129

CTG ...

LAT ...

9012 11 + 115176400 - 115176516 1 117

ATG ...

MAS ...

9014 11 + 117812482 - 117812523 1 42

CTG ...

LHL ...

9017 11 - 60258906 - 60258971 1 66

TTG ...

LPG ...

9019 11 - 121512072 - 121512185 1 114

CTG ...

LKI ...

9021 11 + 61684890 - 61684943 1 54

TTG ...

LAP ...

9023 11 - 100619524 - 100619580 1 57

GTG ...

VVM ...

9026 11 - 118183939 - 118183968 1 30

CTG ...

LER ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5