Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8799 11 + 75751886 - 75752128 1 243

GTG ...

VES ...

8801 1 + 85837335 - 85837400 1 66

TTG ...

LVQ ...

8804 11 + 109653835 - 109653948 1 114

ATG ...

MRA ...

8806 11 - 97173115 - 97173276 1 162

ATG ...

MKT ...

8808 11 - 60241814 - 60241870 1 57

CTG ...

LLE ...

8810 11 - 96058312 - 96058353 1 42

CTG ...

LRI ...

8813 11 + 101027359 - 101027391 1 33

CTG ...

LKS ...

8816 1 + 151361532 - 151361564 1 33

TTG ...

LSE ...

8819 11 - 100372310 - 100372408 1 99

CTG ...

LDM ...

8821 11 - 120809403 - 120809561 1 159

CTG ...

LDS ...

8823 11 - 106251167 - 106251283 1 117

CTG ...

LIC ...

8825 11 + 88049141 - 88049269 1 129

GTG ...

VEF ...

8827 11 - 86730251 - 86730307 1 57

GTG ...

VHL ...

8829 11 - 95059635 - 95059685 1 51

ATG ...

MER ...

8832 1 + 134613195 - 134613251 1 57

TTG ...

LIL ...

8835 11 - 60789653 - 60789682 1 30

GTG ...

VDC ...

8838 11 + 94942865 - 94942906 1 42

CTG ...

LDL ...

8840 11 - 21557502 - 21557531 1 30

ATG ...

MTS ...

8842 11 + 75670566 - 75670613 1 48

GTG ...

VHE ...

8844 11 + 22993270 - 22993323 1 54

TTG ...

LLM ...

8846 1 + 135745263 - 135745424 1 162

CTG ...

LQE ...

8849 11 + 5796768 - 5796827 1 60

ATG ...

MPY ...

8851 11 + 98666547 - 98666651 1 105

CTG ...

LRV ...

8853 11 - 120595956 - 120595988 1 33

ATG ...

MCT ...

8856 11 + 48802316 - 48802432 1 117

TTG ...

LSV ...

8858 11 - 35817332 - 35817523 1 192

GTG ...

VQV ...

8860 11 - 60725183 - 60725224 1 42

ATG ...

MAK ...

8862 11 - 121512072 - 121512215 1 144

CTG ...

LPL ...

8864 11 + 17194669 - 17194737 1 69

TTG ...

LLF ...

8866 11 + 76946268 - 76946513 1 246

TTG ...

LIQ ...

8868 11 - 72403913 - 72403951 1 39

ATG ...

MHL ...

8871 11 + 5865269 - 5865319 1 51

CTG ...

LRR ...

8873 11 - 100372310 - 100372423 1 114

GTG ...

VPL ...

8875 11 - 120579368 - 120579421 1 54

CTG ...

LTT ...

8877 1 - 133621543 - 133621623 1 81

TTG ...

LEA ...

8880 11 - 100247651 - 100247932 1 282

TTG ...

LPP ...

8882 11 + 20218814 - 20218876 1 63

ATG ...

MIR ...

8884 11 - 53268551 - 53268610 1 60

ATG ...

MFD ...

8886 11 - 68843797 - 68843847 1 51

CTG ...

LKY ...

8888 11 - 53430647 - 53430676 1 30

TTG ...

LGT ...

8890 11 + 98666463 - 98666504 1 42

GTG ...

VAT ...

8892 11 - 106251167 - 106251250 1 84

ATG ...

MLR ...

8894 11 + 74656454 - 74656492 1 39

CTG ...

LLR ...

8897 11 - 99073923 - 99073952 1 30

TTG ...

LSL ...

8899 11 + 94937977 - 94938021 1 45

ATG ...

MLD ...

8901 11 - 53266912 - 53267004 1 93

CTG ...

LDR ...

8903 11 - 106785455 - 106785484 1 30

CTG ...

LLN ...

8906 11 + 94213807 - 94213878 1 72

ATG ...

MYT ...

8908 1 + 58401174 - 58401221 1 48

ATG ...

MQL ...

8911 11 - 35817332 - 35817475 1 144

GTG ...

VPL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5