Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8684 11 + 76946382 - 76946513 1 132

GTG ...

VFQ ...

8686 11 + 75638154 - 75638183 1 30

GTG ...

VVW ...

8689 11 + 70527222 - 70527290 1 69

TTG ...

LPS ...

8692 11 - 100247651 - 100247896 1 246

TTG ...

LTM ...

8694 11 - 120579368 - 120579400 1 33

ATG ...

MGR ...

8696 11 - 86233106 - 86233147 1 42

CTG ...

LKP ...

8698 11 - 102877606 - 102877656 1 51

ATG ...

MKM ...

8700 11 - 84048913 - 84048945 1 33

TTG ...

LTL ...

8702 11 - 3526319 - 3526366 1 48

CTG ...

LTA ...

8705 11 + 60464134 - 60464226 1 93

TTG ...

LRY ...

8707 11 - 80484275 - 80484319 1 45

ATG ...

MHR ...

8710 11 - 74699285 - 74699317 1 33

ATG ...

MNC ...

8713 11 - 75410799 - 75410975 1 177

TTG ...

LTM ...

8715 11 - 100207002 - 100207037 1 36

GTG ...

VPW ...

8717 11 + 52242589 - 52242711 1 123

TTG ...

LGM ...

8720 11 + 55108926 - 55108955 1 30

CTG ...

LAS ...

8722 11 - 53266912 - 53267016 1 105

CTG ...

LLW ...

8724 11 - 102877606 - 102877644 1 39

ATG ...

MNW ...

8726 1 + 34863046 - 34863078 1 33

GTG ...

VVR ...

8729 11 - 99071313 - 99071459 1 147

GTG ...

VSV ...

8731 11 - 78228725 - 78228772 1 48

GTG ...

VDS ...

8733 11 - 102877606 - 102877650 1 45

ATG ...

MMM ...

8735 11 + 55108933 - 55108974 1 42

CTG ...

LGQ ...

8737 11 - 68843797 - 68843868 1 72

CTG ...

LQA ...

8740 11 - 55395797 - 55395829 1 33

ATG ...

MGR ...

8742 11 + 61703371 - 61703403 1 33

ATG ...

MRM ...

8744 11 - 53266935 - 53267042 1 108

CTG ...

LWT ...

8746 11 + 4637794 - 4637826 1 33

CTG ...

LNI ...

8749 1 + 118323685 - 118323729 1 45

TTG ...

LAT ...

8752 11 + 76946287 - 76946352 1 66

CTG ...

LTL ...

8754 11 + 94945369 - 94945416 1 48

GTG ...

VFL ...

8757 11 - 30143060 - 30143149 1 90

ATG ...

MRE ...

8760 11 + 48802335 - 48802379 1 45

CTG ...

LTT ...

8762 11 - 86717894 - 86718013 1 120

ATG ...

MCT ...

8764 11 + 101034017 - 101034076 1 60

GTG ...

VQY ...

8767 11 + 63134423 - 63134452 1 30

ATG ...

MAR ...

8770 1 - 86357068 - 86357145 1 78

ATG ...

MKM ...

8772 11 - 53429056 - 53429142 1 87

GTG ...

VVY ...

8774 11 - 70455638 - 70455691 1 54

CTG ...

LCN ...

8776 11 + 76946334 - 76946513 1 180

CTG ...

LLD ...

8778 1 + 172505293 - 172505331 1 39

GTG ...

VRT ...

8781 11 - 116232395 - 116232436 1 42

CTG ...

LSG ...

8783 11 + 88049172 - 88049219 1 48

ATG ...

MQF ...

8785 11 - 20094206 - 20094397 1 192

GTG ...

VNY ...

8787 11 + 61703362 - 61703403 1 42

ATG ...

MGW ...

8789 11 + 94939413 - 94939463 1 51

ATG ...

MAM ...

8791 11 - 53272723 - 53272764 1 42

ATG ...

MQM ...

8793 11 + 55103600 - 55103647 1 48

GTG ...

VAS ...

8795 1 - 86355104 - 86355133 1 30

ATG ...

MWT ...

8797 1 - 161244207 - 161244284 1 78

ATG ...

MIR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5