Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8563 11 + 106048174 - 106048254 1 81

CTG ...

LGT ...

8565 11 - 50300960 - 50301016 1 57

TTG ...

LPT ...

8567 1 + 193161597 - 193161662 1 66

CTG ...

LFH ...

8569 11 + 96802777 - 96802815 1 39

TTG ...

LEL ...

8572 11 + 20215656 - 20215706 1 51

TTG ...

LAI ...

8574 11 - 121513702 - 121513755 1 54

TTG ...

LIQ ...

8576 11 - 69879544 - 69879591 1 48

ATG ...

MAS ...

8579 11 - 106251153 - 106251278 1 126

CTG ...

LPR ...

8581 11 + 53408424 - 53408474 1 51

TTG ...

LAP ...

8584 11 + 48802322 - 48802432 1 111

GTG ...

VAF ...

8586 11 + 70708807 - 70708848 1 42

ATG ...

MRL ...

8589 11 + 70554901 - 70554954 1 54

CTG ...

LNK ...

8591 11 + 94942802 - 94942906 1 105

CTG ...

LEF ...

8593 11 + 76205313 - 76205390 1 78

ATG ...

MPC ...

8596 11 - 60258906 - 60258956 1 51

GTG ...

VSW ...

8598 1 + 74523571 - 74523600 1 30

GTG ...

VSA ...

8601 11 - 120579368 - 120579430 1 63

TTG ...

LTR ...

8604 11 - 118310608 - 118310652 1 45

TTG ...

LCP ...

8606 1 - 128368400 - 128368429 1 30

ATG ...

MFL ...

8609 11 + 76205323 - 76205394 1 72

CTG ...

LLR ...

8611 11 + 76946395 - 76946472 1 78

TTG ...

LCL ...

8613 11 + 5867885 - 5867947 1 63

GTG ...

VDR ...

8616 11 + 80431792 - 80431836 1 45

CTG ...

LDK ...

8618 11 + 94942826 - 94942906 1 81

CTG ...

LPE ...

8620 11 - 100498675 - 100498779 1 105

GTG ...

VSL ...

8622 11 + 98670798 - 98670848 1 51

CTG ...

LCS ...

8625 11 - 120968084 - 120968116 1 33

CTG ...

LSL ...

8628 1 - 107046234 - 107046320 1 87

ATG ...

MRS ...

8631 11 + 22993276 - 22993323 1 48

ATG ...

MLL ...

8634 11 - 35817332 - 35817460 1 129

GTG ...

VKS ...

8636 11 - 60248997 - 60249050 1 54

CTG ...

LPS ...

8638 11 + 5040116 - 5040175 1 60

ATG ...

MEG ...

8641 11 + 20218847 - 20218876 1 30

TTG ...

LVW ...

8643 11 - 120809403 - 120809588 1 186

CTG ...

LDS ...

8645 1 - 86356948 - 86357016 1 69

ATG ...

MRK ...

8647 11 - 115415748 - 115415801 1 54

CTG ...

LDK ...

8650 11 + 102436050 - 102436097 1 48

CTG ...

LLP ...

8652 11 + 53409274 - 53409351 1 78

ATG ...

MPV ...

8654 11 + 77692112 - 77692192 1 81

CTG ...

LDL ...

8656 11 + 94937986 - 94938021 1 36

CTG ...

LYL ...

8658 11 - 97212276 - 97212305 1 30

TTG ...

LIK ...

8660 1 + 91068588 - 91068623 1 36

GTG ...

VQP ...

8663 11 + 77777563 - 77777607 1 45

CTG ...

LTA ...

8665 11 + 72208283 - 72208321 1 39

ATG ...

MLP ...

8668 11 - 120817490 - 120817519 1 30

CTG ...

LPA ...

8671 11 + 107486490 - 107486525 1 36

TTG ...

LIL ...

8674 11 - 86721600 - 86721680 1 81

CTG ...

LDL ...

8676 11 + 72449728 - 72449781 1 54

ATG ...

MPD ...

8679 11 - 97213024 - 97213110 1 87

TTG ...

LEI ...

8681 11 - 99085667 - 99085723 1 57

CTG ...

LSL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5