Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8451 11 + 94939395 - 94939463 1 69

TTG ...

LLP ...

8454 1 + 64570145 - 64570234 1 90

ATG ...

MTY ...

8457 11 + 109663068 - 109663127 1 60

GTG ...

VGH ...

8459 1 + 86136944 - 86137012 1 69

CTG ...

LFP ...

8462 11 + 117356387 - 117356416 1 30

TTG ...

LMR ...

8464 11 - 100371355 - 100371411 1 57

GTG ...

VGG ...

8466 11 - 86725062 - 86725160 1 99

CTG ...

LNK ...

8468 11 + 78518107 - 78518145 1 39

CTG ...

LAR ...

8471 1 + 106875071 - 106875175 1 105

ATG ...

MQK ...

8473 11 + 29740995 - 29741054 1 60

GTG ...

VGI ...

8476 11 + 75759312 - 75759341 1 30

ATG ...

MTQ ...

8478 11 + 76966997 - 76967065 1 69

GTG ...

VWF ...

8480 11 - 100372356 - 100372505 1 150

GTG ...

VVC ...

8482 11 - 106251167 - 106251247 1 81

CTG ...

LRT ...

8484 11 + 76954521 - 76954694 1 174

CTG ...

LYT ...

8486 11 + 16878143 - 16878184 1 42

CTG ...

LQS ...

8488 11 - 53284086 - 53284127 1 42

TTG ...

LRL ...

8490 11 - 86584113 - 86584163 1 51

ATG ...

MAV ...

8493 1 - 75215622 - 75215885 1 264

GTG ...

VVP ...

8496 11 + 75751925 - 75752128 1 204

CTG ...

LTV ...

8499 11 + 119430353 - 119430391 1 39

CTG ...

LAR ...

8502 11 - 55309720 - 55309758 1 39

CTG ...

LRT ...

8504 11 - 75410799 - 75410987 1 189

GTG ...

VTQ ...

8506 1 - 74293904 - 74293954 1 51

CTG ...

LEN ...

8509 11 - 75410799 - 75411035 1 237

CTG ...

LPL ...

8511 11 - 100498675 - 100498773 1 99

TTG ...

LPT ...

8513 1 - 178332143 - 178332352 1 210

TTG ...

LKL ...

8515 11 - 21564157 - 21564216 1 60

ATG ...

MSL ...

8517 11 - 84048913 - 84048966 1 54

ATG ...

MPP ...

8519 11 - 75413841 - 75413996 1 156

TTG ...

LDE ...

8521 11 - 100498617 - 100498685 1 69

CTG ...

LDF ...

8523 1 - 10027099 - 10027227 1 129

GTG ...

VFD ...

8525 11 - 55401879 - 55402061 1 183

ATG ...

MTT ...

8527 11 + 94939422 - 94939463 1 42

ATG ...

MKN ...

8529 11 - 120562157 - 120562189 1 33

GTG ...

VAR ...

8531 11 + 61703329 - 61703403 1 75

ATG ...

MTL ...

8533 11 - 55401947 - 55402015 1 69

GTG ...

VHP ...

8535 11 + 94942796 - 94942906 1 111

GTG ...

VLL ...

8537 11 + 94948785 - 94948817 1 33

CTG ...

LAR ...

8539 1 - 54988070 - 54988105 1 36

TTG ...

LVF ...

8541 11 + 76946380 - 76946472 1 93

ATG ...

MCF ...

8543 11 - 53429037 - 53429105 1 69

TTG ...

LSS ...

8546 11 + 5865281 - 5865319 1 39

CTG ...

LKS ...

8549 11 - 50311722 - 50311757 1 36

GTG ...

VFA ...

8551 11 + 94939419 - 94939463 1 45

ATG ...

MMK ...

8553 11 + 94951546 - 94951593 1 48

ATG ...

MWL ...

8555 11 + 94942859 - 94942906 1 48

GTG ...

VSL ...

8557 11 - 35817332 - 35817490 1 159

GTG ...

VPG ...

8559 11 - 120562157 - 120562192 1 36

GTG ...

VVA ...

8561 11 - 97173115 - 97173195 1 81

ATG ...

MTL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5