Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8333 11 - 75410799 - 75410918 1 120

CTG ...

LKT ...

8335 11 + 106260828 - 106260866 1 39

ATG ...

MGL ...

8337 11 + 75759309 - 75759341 1 33

TTG ...

LMT ...

8339 1 + 172112224 - 172112274 1 51

ATG ...

MRK ...

8342 11 - 97173115 - 97173201 1 87

GTG ...

VKM ...

8344 1 - 171290145 - 171290213 1 69

GTG ...

VEN ...

8347 11 - 97173115 - 97173189 1 75

TTG ...

LCR ...

8349 11 - 106251153 - 106251224 1 72

CTG ...

LES ...

8351 11 - 86730294 - 86730326 1 33

ATG ...

MIL ...

8353 11 + 76951160 - 76951189 1 30

GTG ...

VGY ...

8355 11 + 80469833 - 80469895 1 63

ATG ...

MTQ ...

8358 11 + 23000923 - 23000958 1 36

TTG ...

LKE ...

8361 1 - 120116389 - 120116454 1 66

CTG ...

LQI ...

8363 11 - 106251167 - 106251238 1 72

ATG ...

MMI ...

8365 1 - 135877067 - 135877114 1 48

CTG ...

LTC ...

8367 11 + 76965799 - 76965888 1 90

ATG ...

MPS ...

8369 11 - 53266912 - 53267034 1 123

CTG ...

LPI ...

8371 11 + 22996369 - 22996407 1 39

TTG ...

LKS ...

8373 11 + 109660019 - 109660048 1 30

GTG ...

VST ...

8375 11 - 60725154 - 60725186 1 33

CTG ...

LKN ...

8378 11 + 50379849 - 50379878 1 30

TTG ...

LGV ...

8380 1 + 172113411 - 172113455 1 45

CTG ...

LKN ...

8382 11 - 97177242 - 97177280 1 39

ATG ...

MRK ...

8384 11 + 77692106 - 77692192 1 87

ATG ...

MKL ...

8387 11 - 97173115 - 97173180 1 66

ATG ...

MSF ...

8389 11 - 99000999 - 99001028 1 30

GTG ...

VVS ...

8392 11 - 78228950 - 78229012 1 63

ATG ...

MWN ...

8395 11 + 9119411 - 9119476 1 66

CTG ...

LEA ...

8398 11 + 70554910 - 70554954 1 45

GTG ...

VGD ...

8400 11 - 100204719 - 100204754 1 36

ATG ...

MWR ...

8402 11 + 94213722 - 94213832 1 111

TTG ...

LVK ...

8405 1 - 135918930 - 135918974 1 45

ATG ...

MLP ...

8407 11 + 94950737 - 94950907 1 171

CTG ...

LQP ...

8409 11 - 84048699 - 84048752 1 54

CTG ...

LEA ...

8412 11 - 99071313 - 99071402 1 90

TTG ...

LER ...

8415 11 - 35809091 - 35809120 1 30

CTG ...

LCG ...

8418 11 + 61684578 - 61684769 1 192

CTG ...

LAI ...

8420 1 - 153158848 - 153158934 1 87

GTG ...

VTG ...

8422 11 - 53272723 - 53272758 1 36

ATG ...

MKL ...

8424 11 + 77777557 - 77777607 1 51

TTG ...

LTL ...

8427 11 - 65706980 - 65707045 1 66

GTG ...

VDS ...

8429 11 - 35817332 - 35817517 1 186

GTG ...

VDD ...

8431 11 - 99071313 - 99071474 1 162

CTG ...

LYL ...

8433 11 + 75670584 - 75670613 1 30

GTG ...

VEV ...

8436 11 + 94950811 - 94950885 1 75

CTG ...

LCL ...

8438 11 - 55401879 - 55402025 1 147

TTG ...

LPP ...

8440 11 - 55309720 - 55309779 1 60

GTG ...

VDT ...

8443 11 - 86725062 - 86725175 1 114

TTG ...

LDQ ...

8446 11 + 117356363 - 117356416 1 54

TTG ...

LTC ...

8449 11 - 86722273 - 86722305 1 33

GTG ...

VIS ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5