Metam
ORF

Logo

ORF Browser

Selected

filters

Database

M.musculus

ORFs

No result matching criteria

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8216 1 + 193161615 - 193161662 1 48

TTG ...

LGC ...

8219 11 + 5796777 - 5796827 1 51

CTG ...

LRS ...

8222 11 + 102436053 - 102436097 1 45

TTG ...

LPG ...

8225 11 - 53272723 - 53272752 1 30

CTG ...

LSL ...

8227 11 + 88049045 - 88049269 1 225

CTG ...

LPP ...

8229 11 + 76946305 - 76946352 1 48

TTG ...

LPR ...

8231 1 + 82870687 - 82870716 1 30

CTG ...

LQT ...

8234 11 - 100372310 - 100372390 1 81

CTG ...

LDG ...

8236 1 + 45321542 - 45321610 1 69

ATG ...

MSG ...

8238 11 - 120809403 - 120809543 1 141

GTG ...

VEV ...

8241 11 - 121512072 - 121512200 1 129

CTG ...

LRQ ...

8243 11 + 94950827 - 94950907 1 81

CTG ...

LVH ...

8245 11 - 70967844 - 70967972 1 129

TTG ...

LLS ...

8247 11 - 100372348 - 100372425 1 78

ATG ...

MCL ...

8249 11 + 70554925 - 70554954 1 30

GTG ...

VDR ...

8252 11 - 106251167 - 106251235 1 69

ATG ...

MIL ...

8254 11 + 76986498 - 76986623 1 126

GTG ...

VVL ...

8257 11 - 86721610 - 86721660 1 51

ATG ...

MSC ...

8260 11 - 75410944 - 75411066 1 123

GTG ...

VRI ...

8262 11 + 102432989 - 102433069 1 81

CTG ...

LAG ...

8265 11 - 50304357 - 50304416 1 60

GTG ...

VKL ...

8267 11 - 53266912 - 53267055 1 144

GTG ...

VKT ...

8269 11 - 120562157 - 120562243 1 87

TTG ...

LIT ...

8272 11 + 60538722 - 60538751 1 30

GTG ...

VLQ ...

8275 11 - 106251153 - 106251287 1 135

CTG ...

LSD ...

8277 11 + 94950764 - 94950907 1 144

CTG ...

LQH ...

8279 11 - 116221861 - 116221932 1 72

CTG ...

LPF ...

8282 11 - 60241814 - 60241846 1 33

TTG ...

LTI ...

8285 11 - 100584564 - 100584605 1 42

CTG ...

LRT ...

8288 11 - 97212276 - 97212311 1 36

TTG ...

LQL ...

8290 11 - 20094219 - 20094341 1 123

GTG ...

VGL ...

8292 11 - 103882855 - 103882896 1 42

GTG ...

VVK ...

8294 11 - 100247651 - 100247710 1 60

ATG ...

MSC ...

8296 11 - 86717894 - 86717977 1 84

CTG ...

LGK ...

8298 11 - 55405176 - 55405262 1 87

GTG ...

VSW ...

8300 11 + 94942856 - 94942906 1 51

GTG ...

VVS ...

8302 11 + 52403370 - 52403453 1 84

ATG ...

MRS ...

8304 11 - 53266967 - 53267011 1 45

CTG ...

LAA ...

8306 11 - 103882855 - 103882902 1 48

CTG ...

LVV ...

8308 11 + 52113164 - 52113208 1 45

ATG ...

MSS ...

8311 11 + 16868189 - 16868230 1 42

CTG ...

LRG ...

8313 11 - 100498617 - 100498721 1 105

GTG ...

VWG ...

8315 11 - 60258906 - 60258944 1 39

TTG ...

LFG ...

8317 1 + 43953353 - 43953385 1 33

TTG ...

LVW ...

8320 11 + 50379896 - 50379988 1 93

ATG ...

MAL ...

8322 11 - 55398489 - 55398683 1 195

ATG ...

MRM ...

8324 11 + 115855204 - 115855257 1 54

TTG ...

LAS ...

8327 1 + 86071644 - 86071691 1 48

GTG ...

VND ...

8329 11 + 48802394 - 48802432 1 39

CTG ...

LGV ...

8331 11 - 100260688 - 100260789 1 102

CTG ...

LLQ ...

Previous 71 Next

Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5