Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

8090 11 + 98693617 - 98693715 1 99

CTG ...

LDQ ...

8093 11 + 80431782 - 80431823 1 42

CTG ...

LAK ...

8096 11 - 100372348 - 100372455 1 108

ATG ...

MPP ...

8099 11 + 94950790 - 94950885 1 96

GTG ...

VCS ...

8101 11 - 97212276 - 97212320 1 45

TTG ...

LRG ...

8104 11 - 53266912 - 53266983 1 72

CTG ...

LYT ...

8107 11 - 102877606 - 102877659 1 54

CTG ...

LMK ...

8109 11 + 76946345 - 76946443 1 99

ATG ...

MSE ...

8111 11 + 120471530 - 120471607 1 78

CTG ...

LGT ...

8114 11 + 48804229 - 48804300 1 72

ATG ...

MPC ...

8116 11 - 20064700 - 20064729 1 30

GTG ...

VSV ...

8119 11 - 97238195 - 97238233 1 39

ATG ...

MKA ...

8122 11 - 86233106 - 86233165 1 60

CTG ...

LRL ...

8125 11 + 94937992 - 94938021 1 30

CTG ...

LPQ ...

8128 11 - 99386595 - 99386636 1 42

CTG ...

LRP ...

8131 11 - 75410799 - 75410993 1 195

CTG ...

LTV ...

8134 11 - 20094206 - 20094415 1 210

CTG ...

LRS ...

8136 11 + 106260834 - 106260866 1 33

TTG ...

LSL ...

8138 11 - 65706980 - 65707060 1 81

GTG ...

VIS ...

8140 11 - 20094394 - 20094432 1 39

GTG ...

VMR ...

8142 11 + 94950484 - 94950612 1 129

TTG ...

LRT ...

8144 11 - 118310608 - 118310661 1 54

GTG ...

VTS ...

8147 11 + 60943226 - 60943294 1 69

GTG ...

VRH ...

8150 11 - 97163464 - 97163508 1 45

GTG ...

VYS ...

8152 11 + 76910248 - 76910289 1 42

CTG ...

LTM ...

8155 11 + 20223083 - 20223166 1 84

GTG ...

VGH ...

8158 11 + 16868186 - 16868230 1 45

GTG ...

VLR ...

8161 11 - 69743596 - 69743658 1 63

TTG ...

LQI ...

8163 11 + 70525918 - 70525956 1 39

GTG ...

VVL ...

8165 11 - 20094394 - 20094435 1 42

TTG ...

LVM ...

8167 11 + 88049062 - 88049091 1 30

CTG ...

LAG ...

8170 11 - 106251167 - 106251217 1 51

GTG ...

VTW ...

8173 11 - 69747368 - 69747409 1 42

CTG ...

LLL ...

8175 11 - 53266912 - 53267040 1 129

GTG ...

VDL ...

8177 11 - 70654356 - 70654433 1 78

CTG ...

LSG ...

8179 1 - 92460376 - 92460465 1 90

GTG ...

VVE ...

8182 11 - 93960657 - 93960737 1 81

TTG ...

LER ...

8185 11 + 51789300 - 51789332 1 33

TTG ...

LVY ...

8187 11 + 94937962 - 94938021 1 60

GTG ...

VET ...

8189 11 - 70967844 - 70967969 1 126

TTG ...

LSP ...

8192 11 - 116023728 - 116023784 1 57

CTG ...

LQA ...

8195 11 + 52403379 - 52403453 1 75

CTG ...

LKT ...

8198 11 - 97213024 - 97213089 1 66

CTG ...

LGG ...

8200 11 - 79936023 - 79936058 1 36

CTG ...

LRT ...

8202 11 + 75764650 - 75764682 1 33

ATG ...

MWK ...

8204 11 - 100258405 - 100258473 1 69

GTG ...

VIS ...

8206 11 + 55103669 - 55103698 1 30

CTG ...

LTP ...

8208 11 + 48804268 - 48804300 1 33

CTG ...

LPL ...

8210 11 + 106037161 - 106037190 1 30

ATG ...

MKR ...

8213 11 - 33162952 - 33162996 1 45

GTG ...

VRA ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5