Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

7952 11 + 17194699 - 17194737 1 39

ATG ...

MAI ...

7955 11 + 52376495 - 52376524 1 30

GTG ...

VEH ...

7958 11 - 65712166 - 65712228 1 63

GTG ...

VLD ...

7961 11 + 76946397 - 76946513 1 117

GTG ...

VPQ ...

7963 1 + 63178461 - 63178571 1 111

TTG ...

LGK ...

7965 11 - 50299110 - 50299148 1 39

CTG ...

LLM ...

7968 11 - 100247651 - 100247917 1 267

ATG ...

MHS ...

7971 1 + 17619811 - 17619864 1 54

CTG ...

LRH ...

7973 11 + 75764620 - 75764682 1 63

GTG ...

VKS ...

7976 11 + 51619868 - 51619981 1 114

CTG ...

LQR ...

7979 11 - 100498675 - 100498719 1 45

GTG ...

VGH ...

7982 11 + 76946337 - 76946513 1 177

CTG ...

LDI ...

7984 11 + 70525900 - 70525956 1 57

GTG ...

VQF ...

7987 11 + 48800511 - 48800594 1 84

ATG ...

MGN ...

7990 11 + 55103597 - 55103647 1 51

TTG ...

LVA ...

7993 11 - 21564157 - 21564210 1 54

TTG ...

LQR ...

7996 1 + 106953796 - 106953849 1 54

CTG ...

LKT ...

7998 11 - 103882855 - 103882932 1 78

ATG ...

MLK ...

8001 11 - 50304357 - 50304410 1 54

TTG ...

LKT ...

8004 11 - 94496308 - 94496349 1 42

ATG ...

MTA ...

8007 11 + 22996356 - 22996529 1 174

TTG ...

LEK ...

8010 11 - 118183947 - 118183985 1 39

GTG ...

VEL ...

8013 11 - 121512072 - 121512101 1 30

GTG ...

VMN ...

8016 11 + 17194684 - 17194737 1 54

ATG ...

MTW ...

8018 11 - 90661752 - 90661796 1 45

GTG ...

VNE ...

8021 11 + 60464176 - 60464226 1 51

GTG ...

VGV ...

8024 11 - 100911208 - 100911249 1 42

TTG ...

LRV ...

8027 11 - 17211016 - 17211072 1 57

CTG ...

LDE ...

8030 11 - 100498617 - 100498697 1 81

GTG ...

VQG ...

8032 11 - 90658136 - 90658183 1 48

TTG ...

LEQ ...

8034 11 + 115176394 - 115176516 1 123

ATG ...

MAM ...

8037 11 + 51789243 - 51789332 1 90

TTG ...

LEI ...

8040 11 - 69002543 - 69002575 1 33

GTG ...

VAV ...

8043 11 - 79937665 - 79937700 1 36

CTG ...

LRE ...

8046 11 + 45884377 - 45884427 1 51

TTG ...

LVP ...

8049 11 - 100259669 - 100259773 1 105

TTG ...

LWP ...

8052 11 - 106251167 - 106251259 1 93

ATG ...

MCQ ...

8055 1 - 135884944 - 135885042 1 99

CTG ...

LLP ...

8057 11 - 20094206 - 20094370 1 165

GTG ...

VRN ...

8060 11 + 76954540 - 76954635 1 96

CTG ...

LVH ...

8063 11 - 97164712 - 97164786 1 75

CTG ...

LLG ...

8066 11 - 35817332 - 35817496 1 165

GTG ...

VFV ...

8069 11 + 77847308 - 77847340 1 33

TTG ...

LNQ ...

8072 11 + 76946349 - 76946513 1 165

CTG ...

LRR ...

8074 11 + 50382542 - 50382694 1 153

TTG ...

LKY ...

8077 11 + 97799805 - 97799861 1 57

CTG ...

LCP ...

8080 11 - 70652783 - 70652902 1 120

ATG ...

MFC ...

8083 11 + 61702463 - 61702531 1 69

ATG ...

MVS ...

8085 11 + 106260863 - 106260913 1 51

ATG ...

MIR ...

8088 11 - 55398489 - 55398659 1 171

CTG ...

LET ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5