Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

7824 10 - 86703570 - 86704378 2 117

ATG ...

MKS ...

7826 10 + 60295843 - 60299135 3 198

TTG ...

LLG ...

7828 1 - 86356948 - 86357004 1 57

ATG ...

MRM ...

7830 10 + 128088385 - 128089026 2 219

ATG ...

MLP ...

7832 10 - 86703570 - 86704384 2 123

CTG ...

LMM ...

7834 1 + 130718849 - 130718914 1 66

TTG ...

LPL ...

7836 10 - 77991368 - 77992064 2 123

ATG ...

MWQ ...

7838 10 - 86703570 - 86704312 2 51

ATG ...

MMK ...

7840 10 + 18853619 - 18855719 2 129

GTG ...

VWT ...

7842 10 - 86703570 - 86704309 2 48

ATG ...

MKL ...

7844 10 + 127515478 - 127516305 2 51

CTG ...

LMS ...

7846 10 + 127902387 - 127903603 2 54

GTG ...

VLK ...

7848 10 + 60295077 - 60295994 2 81

GTG ...

VTA ...

7850 10 + 127902336 - 127903603 2 105

CTG ...

LVA ...

7852 10 + 79709765 - 79710072 2 78

CTG ...

LDE ...

7854 10 + 128089110 - 128090119 2 177

CTG ...

LVP ...

7856 10 + 128089119 - 128090119 2 168

TTG ...

LKE ...

7858 10 + 45072081 - 45091074 2 129

GTG ...

VTR ...

7860 10 + 127515463 - 127516305 2 66

TTG ...

LPC ...

7862 10 - 78715839 - 78718166 3 108

TTG ...

LET ...

7864 10 - 78715868 - 78718189 2 102

ATG ...

MTA ...

7866 10 - 127588586 - 127589607 2 78

ATG ...

MPS ...

7868 10 + 60299540 - 60299788 2 30

TTG ...

LSI ...

7870 10 - 61107662 - 61112187 2 30

ATG ...

MGD ...

7873 10 + 76546168 - 76546769 2 51

CTG ...

LSI ...

7876 10 - 77991368 - 77992067 2 126

ATG ...

MMW ...

7878 10 - 128560970 - 128562891 2 78

ATG ...

MSL ...

7880 1 + 193304511 - 193304555 1 45

TTG ...

LEG ...

7882 10 + 127515412 - 127516305 2 117

TTG ...

LAS ...

7884 10 - 24916433 - 24916879 3 132

TTG ...

LFL ...

7887 10 - 91158834 - 91164084 2 54

ATG ...

MEV ...

7889 10 - 127588586 - 127589571 2 42

ATG ...

MAQ ...

7891 10 + 128359471 - 128359974 2 96

TTG ...

LAK ...

7893 10 - 81049867 - 81051040 2 57

CTG ...

LKR ...

7907 1 - 182470175 - 182470216 1 42

CTG ...

LRT ...

7909 11 + 94950788 - 94950907 1 120

CTG ...

LCV ...

7912 11 + 76946371 - 76946472 1 102

GTG ...

VLS ...

7915 11 + 88047977 - 88048036 1 60

CTG ...

LKN ...

7918 11 - 100204402 - 100204482 1 81

CTG ...

LSS ...

7921 11 - 55398489 - 55398677 1 189

ATG ...

MRS ...

7924 1 - 178331837 - 178331941 1 105

TTG ...

LAC ...

7926 11 + 69135866 - 69135934 1 69

TTG ...

LQV ...

7929 11 - 69747368 - 69747415 1 48

CTG ...

LCL ...

7932 1 - 86356041 - 86356082 1 42

CTG ...

LLW ...

7934 11 - 70455638 - 70455694 1 57

GTG ...

VLC ...

7937 11 + 61703338 - 61703403 1 66

ATG ...

MAW ...

7940 11 - 102877606 - 102877647 1 42

ATG ...

MMN ...

7943 11 - 7209487 - 7209573 1 87

CTG ...

LPQ ...

7946 11 + 109653810 - 109653878 1 69

GTG ...

VRK ...

7949 1 + 88215155 - 88215205 1 51

TTG ...

LGR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5