Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

7716 1 + 43953281 - 43953385 1 105

TTG ...

LQS ...

7718 10 + 127515481 - 127516305 2 48

ATG ...

MSA ...

7720 10 + 18853586 - 18855719 2 162

GTG ...

VHL ...

7722 1 + 17619790 - 17619864 1 75

ATG ...

MKI ...

7724 10 - 77991368 - 77992040 2 99

GTG ...

VAR ...

7726 10 + 18845333 - 18855719 3 285

TTG ...

LVE ...

7728 10 - 128560245 - 128560701 2 93

ATG ...

MER ...

7730 10 - 77991368 - 77992043 2 102

GTG ...

VVA ...

7732 10 - 86703570 - 86704363 2 102

ATG ...

MAQ ...

7734 10 + 18853592 - 18855719 2 156

CTG ...

LLH ...

7736 10 + 45097474 - 45107829 2 99

CTG ...

LSS ...

7738 1 + 55089085 - 55089126 1 42

TTG ...

LTE ...

7741 10 - 128730676 - 128731087 2 48

GTG ...

VCG ...

7744 10 - 76611979 - 76613321 3 90

GTG ...

VLQ ...

7747 10 + 18845342 - 18855719 3 276

GTG ...

VFR ...

7749 10 + 128359489 - 128359974 2 78

ATG ...

MRS ...

7751 10 - 128558956 - 128559132 3 87

CTG ...

LLL ...

7753 10 + 81076971 - 81077940 2 108

CTG ...

LKQ ...

7755 10 - 81049867 - 81051058 2 75

CTG ...

LTG ...

7757 10 - 91158834 - 91164105 2 75

CTG ...

LQK ...

7760 10 - 117349464 - 117356122 3 192

GTG ...

VND ...

7762 10 - 128558956 - 128559126 3 81

CTG ...

LFS ...

7764 10 + 111495344 - 111496082 3 75

ATG ...

MRK ...

7766 10 - 86703570 - 86704423 3 162

GTG ...

VES ...

7768 10 - 78715868 - 78718180 2 93

CTG ...

LLS ...

7770 10 + 127515439 - 127516305 2 90

GTG ...

VPD ...

7772 1 - 135879772 - 135880008 1 237

CTG ...

LPT ...

7774 10 + 127902390 - 127903603 2 51

TTG ...

LKP ...

7776 10 + 18845336 - 18855719 3 282

GTG ...

VEV ...

7778 10 - 86703570 - 86704471 3 210

TTG ...

LPP ...

7780 10 + 128088415 - 128089026 2 189

CTG ...

LSW ...

7782 10 - 127098091 - 127098390 2 81

CTG ...

LRL ...

7784 10 - 78715868 - 78718144 2 57

CTG ...

LIP ...

7786 10 - 127588586 - 127589598 2 69

ATG ...

MTE ...

7788 10 + 127898917 - 127902270 2 144

GTG ...

VGE ...

7790 10 + 45097471 - 45107829 2 102

GTG ...

VLS ...

7792 10 - 86703570 - 86704381 2 120

ATG ...

MMK ...

7794 10 + 127902384 - 127903603 2 57

TTG ...

LVL ...

7796 10 + 81079463 - 81079874 2 135

CTG ...

LCH ...

7798 10 - 62299155 - 62304769 2 165

CTG ...

LRS ...

7801 10 + 45072066 - 45091074 2 144

ATG ...

MDI ...

7803 10 - 128558956 - 128559099 2 54

CTG ...

LQV ...

7805 10 + 77587257 - 77589679 2 93

CTG ...

LST ...

7808 10 + 79709776 - 79710059 2 54

GTG ...

VAR ...

7811 10 + 18853568 - 18855719 2 180

CTG ...

LWL ...

7813 1 - 10027099 - 10027164 1 66

TTG ...

LGL ...

7816 10 + 127902339 - 127903603 2 102

GTG ...

VAV ...

7818 10 + 127902363 - 127903603 2 78

GTG ...

VVT ...

7820 10 + 60295846 - 60299135 3 195

TTG ...

LGL ...

7822 10 - 127588586 - 127589589 2 60

TTG ...

LRP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5