Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

9712 12 - 51889553 - 51889594 1 42

GTG ...

VIR ...

9715 12 + 55407511 - 55407567 1 57

TTG ...

LLS ...

9717 12 - 31334670 - 31334726 1 57

TTG ...

LHW ...

9719 12 - 108692129 - 108692269 1 141

CTG ...

LVL ...

9722 12 + 83664109 - 83664297 1 189

GTG ...

VNE ...

9724 12 + 8789444 - 8789521 1 78

ATG ...

MAL ...

9727 12 - 108875220 - 108875276 1 57

ATG ...

MCL ...

9729 12 + 73928026 - 73928076 1 51

CTG ...

LFL ...

9732 12 - 87341528 - 87341686 1 159

CTG ...

LDE ...

9734 12 + 100203608 - 100203697 1 90

ATG ...

MVT ...

9736 12 + 17278560 - 17278670 1 111

ATG ...

MTP ...

9739 12 + 55410193 - 55410267 1 75

ATG ...

MKF ...

9741 12 + 113144407 - 113144517 1 111

GTG ...

VTS ...

9743 12 - 87309901 - 87309987 1 87

CTG ...

LQL ...

9745 12 + 110629288 - 110629356 1 69

GTG ...

VEH ...

9747 1 - 84725388 - 84725483 1 96

TTG ...

LFE ...

9749 12 + 8790715 - 8790870 1 156

CTG ...

LAS ...

9751 12 - 80209355 - 80209459 1 105

GTG ...

VQL ...

9753 12 + 83664163 - 83664297 1 135

GTG ...

VTA ...

9755 12 + 69373012 - 69373119 1 108

CTG ...

LAA ...

9757 12 - 87309901 - 87309960 1 60

CTG ...

LVP ...

9759 12 + 100206105 - 100206143 1 39

ATG ...

MVT ...

9761 12 + 69373060 - 69373119 1 60

CTG ...

LRR ...

9763 12 + 100203611 - 100203697 1 87

GTG ...

VTA ...

9765 12 + 79211407 - 79211442 1 36

TTG ...

LPR ...

9768 12 + 55412337 - 55412369 1 33

TTG ...

LIG ...

9770 12 - 87309901 - 87309990 1 90

CTG ...

LLQ ...

9772 12 + 8790820 - 8790870 1 51

ATG ...

MEL ...

9774 12 + 95780617 - 95780658 1 42

GTG ...

VEI ...

9777 12 + 8790784 - 8790870 1 87

GTG ...

VAA ...

9779 12 - 51764017 - 51764064 1 48

ATG ...

MKM ...

9781 12 - 84760752 - 84760799 1 48

GTG ...

VES ...

9784 12 - 78894384 - 78894428 1 45

CTG ...

LSS ...

9787 12 + 32974228 - 32974290 1 63

TTG ...

LWR ...

9790 12 + 85130503 - 85130535 1 33

ATG ...

MQI ...

9793 12 - 51806379 - 51806411 1 33

TTG ...

LNL ...

9795 12 + 85222748 - 85222798 1 51

ATG ...

MKW ...

9798 12 + 32965472 - 32965504 1 33

GTG ...

VTA ...

9801 12 + 8710172 - 8710276 1 105

CTG ...

LKQ ...

9803 12 - 87346694 - 87346795 1 102

CTG ...

LIL ...

9806 12 - 84760752 - 84760814 1 63

CTG ...

LTV ...

9808 1 + 63178516 - 63178596 1 81

ATG ...

MLR ...

9810 12 - 55490402 - 55490449 1 48

ATG ...

MRR ...

9813 12 + 8791301 - 8791339 1 39

TTG ...

LKH ...

9815 12 + 100206207 - 100206272 1 66

ATG ...

MAT ...

9817 1 - 75215622 - 75215867 1 246

CTG ...

LAK ...

9819 12 + 111542711 - 111542752 1 42

CTG ...

LIK ...

9822 12 - 104037908 - 104038045 1 138

CTG ...

LGR ...

9824 12 - 78843525 - 78843566 1 42

TTG ...

LRR ...

9827 12 + 8789413 - 8789511 1 99

GTG ...

VAV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5