Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

43522 19 + 10204227 - 10206439 3 54

GTG ...

VAD ...

43525 19 - 12778009 - 12778895 3 78

ATG ...

MMF ...

43527 19 + 10623383 - 10623618 2 144

ATG ...

MRS ...

43529 19 + 8742143 - 8742301 3 60

GTG ...

VGS ...

43531 19 + 38946803 - 38950388 2 267

CTG ...

LQI ...

43533 19 + 8822909 - 8823294 2 96

ATG ...

MNS ...

43535 19 - 37303655 - 37309831 3 171

TTG ...

LID ...

43537 19 + 8822888 - 8823294 2 117

ATG ...

MNM ...

43539 19 + 8910702 - 8911068 3 276

CTG ...

LQG ...

43541 19 + 8742122 - 8742301 3 81

GTG ...

VQD ...

43543 19 - 6977873 - 6978489 4 198

CTG ...

LWD ...

43545 19 + 8915249 - 8915456 2 75

CTG ...

LAA ...

43547 19 - 34251852 - 34252513 2 96

ATG ...

MAL ...

43549 19 + 10903444 - 10905132 3 222

CTG ...

LDN ...

43551 1 - 164439346 - 164441641 2 222

ATG ...

MFP ...

43553 19 + 26776109 - 26777370 2 171

GTG ...

VKV ...

43555 19 - 34251852 - 34252588 4 171

CTG ...

LSL ...

43557 19 + 53233844 - 53234791 2 93

ATG ...

MAW ...

43559 19 - 7229762 - 7229978 2 75

ATG ...

MWS ...

43561 1 - 44088000 - 44088540 3 114

TTG ...

LFY ...

43563 19 - 15909338 - 15914963 2 192

ATG ...

MTC ...

43565 19 - 52991591 - 52995495 2 204

CTG ...

LTF ...

43567 19 - 7199965 - 7204152 2 192

CTG ...

LCR ...

43569 19 - 12778009 - 12778633 2 48

GTG ...

VAL ...

43571 19 - 34251852 - 34252618 4 201

ATG ...

MLC ...

43573 19 - 7427757 - 7431083 5 276

GTG ...

VLL ...

43575 19 + 6294505 - 6297614 2 204

CTG ...

LTT ...

43577 1 + 84896564 - 84900185 2 288

CTG ...

LER ...

43579 19 - 7427757 - 7429784 3 153

TTG ...

LPG ...

43581 19 + 46341167 - 46366369 2 63

GTG ...

VET ...

43583 19 - 8709586 - 8709808 3 117

TTG ...

LPV ...

43585 1 - 75478385 - 75479042 2 279

CTG ...

LGF ...

43587 19 - 5422920 - 5423669 5 255

CTG ...

LYL ...

43589 19 - 7427757 - 7429793 3 162

ATG ...

MLG ...

43591 19 + 3714623 - 3715676 2 42

CTG ...

LIP ...

43594 19 - 44078953 - 44081948 2 36

CTG ...

LIT ...

43597 19 - 9116502 - 9118562 2 153

TTG ...

LRR ...

43599 19 + 10903369 - 10905132 3 297

CTG ...

LAT ...

43601 19 + 26776127 - 26777370 2 153

CTG ...

LNK ...

43603 19 - 5100780 - 5104963 4 246

CTG ...

LLS ...

43605 1 - 171231007 - 171231214 2 63

ATG ...

MVL ...

43607 19 - 46382403 - 46385089 4 219

GTG ...

VWA ...

43609 19 + 5367112 - 5368168 2 210

TTG ...

LFA ...

43611 19 + 8742113 - 8742301 3 90

GTG ...

VSR ...

43613 19 - 10943170 - 10943480 2 123

GTG ...

VIR ...

43615 19 - 10574971 - 10575447 3 246

CTG ...

LGR ...

43617 19 - 7427757 - 7429790 3 159

TTG ...

LGL ...

43619 19 - 10064263 - 10064879 3 246

CTG ...

LGW ...

43621 19 - 5365858 - 5366280 3 117

GTG ...

VLV ...

43623 19 - 34243451 - 34244965 2 102

TTG ...

LET ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5