Metam
ORF

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ORF Browser

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

43415 19 + 46341165 - 46366343 2 39

TTG ...

LWR ...

43417 19 - 7199965 - 7204170 3 210

CTG ...

LPP ...

43419 19 - 41770186 - 41774242 4 267

TTG ...

LQA ...

43421 19 + 10185827 - 10186465 2 144

TTG ...

LEL ...

43423 19 - 5422920 - 5423346 3 72

CTG ...

LPT ...

43425 19 + 46341146 - 46366369 2 84

ATG ...

MPE ...

43427 19 + 5041482 - 5045964 3 81

GTG ...

VSA ...

43429 19 - 10574971 - 10575477 3 276

TTG ...

LEK ...

43431 19 + 10903638 - 10905132 2 204

GTG ...

VKS ...

43433 19 - 10574971 - 10575402 3 201

ATG ...

MYP ...

43435 19 + 53331474 - 53369567 3 66

CTG ...

LPT ...

43437 1 - 60097640 - 60098082 2 126

ATG ...

MGP ...

43440 19 - 5424240 - 5424758 4 195

CTG ...

LRA ...

43442 19 + 10903674 - 10905132 2 168

CTG ...

LAL ...

43444 19 - 6137630 - 6137796 2 78

ATG ...

MEK ...

43447 1 - 143667642 - 143670019 2 78

ATG ...

MTK ...

43449 19 - 7432535 - 7434964 2 90

CTG ...

LCR ...

43451 19 + 10622491 - 10623618 3 195

CTG ...

LTV ...

43453 19 + 10623371 - 10623618 2 156

TTG ...

LAP ...

43455 19 - 9116502 - 9118598 2 189

CTG ...

LRE ...

43457 19 + 6294595 - 6297614 2 114

ATG ...

MTS ...

43460 19 - 37271534 - 37272181 2 66

ATG ...

MFL ...

43462 1 - 171235050 - 171235351 3 117

TTG ...

LPP ...

43464 19 + 5367175 - 5368168 2 147

CTG ...

LES ...

43466 19 - 52997922 - 53000473 4 168

CTG ...

LPL ...

43468 19 - 5424240 - 5424378 2 54

CTG ...

LCL ...

43471 19 - 46903936 - 46905029 2 93

TTG ...

LAI ...

43473 1 + 167350365 - 167354000 3 282

GTG ...

VEP ...

43476 19 - 6978405 - 6978603 2 78

TTG ...

LAL ...

43478 19 - 46382403 - 46385041 3 171

GTG ...

VTS ...

43480 19 - 53013405 - 53014637 2 126

TTG ...

LSL ...

43482 19 - 5365952 - 5366622 2 60

CTG ...

LGG ...

43484 1 - 165179256 - 165185106 6 261

GTG ...

VCL ...

43487 19 - 8709586 - 8709814 3 123

TTG ...

LIL ...

43489 19 - 7199965 - 7204092 2 132

CTG ...

LRM ...

43492 19 + 5048924 - 5049414 3 117

CTG ...

LDC ...

43494 19 - 5100780 - 5104726 2 105

CTG ...

LVR ...

43496 19 - 53013405 - 53014727 3 216

ATG ...

MPI ...

43498 19 - 41770186 - 41774272 4 297

TTG ...

LFV ...

43500 19 + 10903438 - 10905132 3 228

TTG ...

LQL ...

43502 19 + 6090420 - 6090728 2 186

TTG ...

LVP ...

43504 19 - 5100780 - 5104747 3 126

CTG ...

LTR ...

43506 19 - 7432535 - 7435048 2 174

GTG ...

VLS ...

43508 1 + 165770755 - 165770820 1 66

TTG ...

LDY ...

43510 19 + 20636801 - 20640080 2 42

CTG ...

LLC ...

43512 19 + 53233898 - 53234791 2 39

ATG ...

MYR ...

43514 1 - 171288891 - 171289287 3 198

ATG ...

MLS ...

43516 19 - 5108605 - 5109440 4 282

CTG ...

LFF ...

43518 19 + 60814683 - 60821236 2 156

CTG ...

LLR ...

43520 19 - 34246210 - 34246687 2 66

CTG ...

LCC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5