Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

43304 19 - 7284572 - 7284686 2 33

CTG ...

LTT ...

43307 19 - 10064263 - 10064831 3 198

CTG ...

LPT ...

43309 19 + 8741551 - 8742258 2 30

GTG ...

VVA ...

43312 19 + 60814635 - 60821236 2 204

CTG ...

LWV ...

43314 19 - 41770186 - 41774191 4 216

CTG ...

LFL ...

43316 1 - 52204505 - 52214515 4 273

TTG ...

LWG ...

43319 19 - 10574971 - 10575264 2 63

CTG ...

LLS ...

43321 1 - 177776453 - 177776563 1 111

TTG ...

LGT ...

43323 19 - 53013405 - 53014685 3 174

CTG ...

LFS ...

43325 19 + 5367134 - 5368082 2 102

CTG ...

LSR ...

43327 19 - 34251852 - 34252507 2 90

CTG ...

LGS ...

43329 19 - 34246210 - 34246729 2 108

TTG ...

LRP ...

43331 19 - 41784379 - 41784800 2 63

TTG ...

LHP ...

43333 19 + 20640105 - 20642943 2 84

GTG ...

VDS ...

43335 19 + 53233664 - 53234791 3 165

ATG ...

MRR ...

43337 19 - 7199965 - 7204095 2 135

ATG ...

MLR ...

43339 19 - 46903936 - 46905002 2 66

TTG ...

LHM ...

43341 19 - 52991591 - 52995474 2 183

TTG ...

LVP ...

43343 19 + 17398632 - 17399603 2 180

GTG ...

VAI ...

43346 19 - 53002526 - 53002709 2 57

CTG ...

LRL ...

43348 19 + 5041458 - 5045964 3 105

CTG ...

LDV ...

43350 19 - 53013405 - 53025269 3 174

ATG ...

MPT ...

43352 19 - 7199965 - 7204230 3 270

CTG ...

LCC ...

43354 19 - 34246210 - 34246717 2 96

ATG ...

MSP ...

43356 1 - 53158747 - 53181916 7 288

ATG ...

MRL ...

43359 19 - 10066286 - 10066649 3 198

GTG ...

VGQ ...

43361 19 - 8708214 - 8709261 3 237

ATG ...

MPL ...

43363 19 - 15916936 - 15918242 3 246

GTG ...

VNI ...

43365 19 + 6090444 - 6090728 2 162

TTG ...

LVP ...

43367 19 - 6977873 - 6978053 3 105

TTG ...

LTG ...

43371 19 - 24295548 - 24304060 3 36

ATG ...

MMP ...

43374 19 - 7229762 - 7230029 2 126

TTG ...

LLG ...

43376 19 + 6090330 - 6090728 2 276

TTG ...

LPG ...

43379 19 - 10574971 - 10575309 2 108

ATG ...

MTC ...

43381 19 - 5424240 - 5424396 2 72

TTG ...

LGR ...

43384 19 + 20636813 - 20640080 2 30

CTG ...

LGW ...

43386 19 - 15907033 - 15909325 2 60

TTG ...

LII ...

43388 19 - 34246210 - 34246702 2 81

ATG ...

MWL ...

43390 19 - 7199965 - 7204433 4 240

ATG ...

MMK ...

43392 19 - 7427757 - 7431080 5 273

CTG ...

LLE ...

43394 1 - 178329332 - 178330286 4 270

GTG ...

VEV ...

43396 19 - 34251852 - 34252564 3 147

CTG ...

LLQ ...

43398 19 + 53233643 - 53234791 3 186

ATG ...

MTT ...

43400 19 + 5041464 - 5045964 3 99

GTG ...

VRP ...

43402 19 - 15920966 - 15924895 2 63

TTG ...

LGP ...

43404 19 + 20621705 - 20623361 2 63

TTG ...

LEC ...

43406 19 - 5424240 - 5424743 4 180

CTG ...

LGP ...

43409 19 + 6371278 - 6371637 2 162

CTG ...

LNQ ...

43411 19 - 7228021 - 7228385 2 105

ATG ...

MAP ...

43413 19 - 7199965 - 7204155 2 195

TTG ...

LLC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5