Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

43199 19 - 15920966 - 15924967 3 135

GTG ...

VVS ...

43201 19 - 37303655 - 37309822 3 162

ATG ...

MVL ...

43203 19 + 60814641 - 60821236 2 198

GTG ...

VWC ...

43205 19 + 5493453 - 5493493 2 39

GTG ...

VAA ...

43207 19 - 7229762 - 7230002 2 99

TTG ...

LPF ...

43209 19 + 8902347 - 8902613 2 114

GTG ...

VMR ...

43211 19 - 53013405 - 53014664 2 153

TTG ...

LHP ...

43213 1 - 171288891 - 171289332 3 243

GTG ...

VFP ...

43215 19 - 9116502 - 9118541 2 132

CTG ...

LTA ...

43217 1 - 171229921 - 171231000 3 33

GTG ...

VRK ...

43220 19 - 7432535 - 7435039 2 165

GTG ...

VWS ...

43222 19 - 8772673 - 8773117 3 252

TTG ...

LFH ...

43225 19 + 26776205 - 26777370 2 75

GTG ...

VSD ...

43228 19 - 34251852 - 34252582 4 165

CTG ...

LQN ...

43230 19 + 4097984 - 4098565 3 222

CTG ...

LYF ...

43232 19 - 15916936 - 15918296 3 300

GTG ...

VTG ...

43234 19 + 6371344 - 6371637 2 96

TTG ...

LKR ...

43236 19 - 15909338 - 15914972 2 201

TTG ...

LSG ...

43238 19 - 9119313 - 9134819 2 51

CTG ...

LSW ...

43240 1 - 191306927 - 191310028 3 273

CTG ...

LQS ...

43242 1 - 172067316 - 172067459 1 144

CTG ...

LAR ...

43244 19 - 6977873 - 6978059 3 111

GTG ...

VLL ...

43246 19 - 52996981 - 52997897 2 117

CTG ...

LFS ...

43248 19 - 34243451 - 34244914 2 51

TTG ...

LGW ...

43250 19 - 5905535 - 5906622 2 117

CTG ...

LDS ...

43252 19 + 20621696 - 20623361 2 72

GTG ...

VNL ...

43254 19 + 53233682 - 53234791 3 147

TTG ...

LNF ...

43256 19 - 7199965 - 7204451 4 258

GTG ...

VLT ...

43258 19 - 7199965 - 7204086 2 126

ATG ...

MTT ...

43260 19 + 8890055 - 8890520 2 156

TTG ...

LQQ ...

43262 19 - 46382403 - 46385071 3 201

ATG ...

MFV ...

43264 19 - 7432535 - 7435006 2 132

CTG ...

LSP ...

43266 1 - 156457990 - 156466750 3 108

CTG ...

LSK ...

43268 19 - 5100780 - 5104891 3 174

GTG ...

VWI ...

43270 1 + 87297660 - 87309703 2 147

GTG ...

VSC ...

43272 19 + 8902350 - 8902613 2 111

ATG ...

MRV ...

43274 19 - 53002526 - 53003801 3 123

TTG ...

LPS ...

43276 1 + 166379424 - 166379480 1 57

CTG ...

LEA ...

43278 19 + 4097936 - 4098565 3 270

TTG ...

LLM ...

43280 1 + 85905317 - 85906452 2 117

TTG ...

LRR ...

43282 19 + 16316029 - 16317099 2 153

TTG ...

LVR ...

43284 19 + 6368430 - 6371637 3 183

CTG ...

LRT ...

43286 19 - 44550320 - 44552862 3 258

CTG ...

LPQ ...

43289 19 - 9118668 - 9119210 2 42

TTG ...

LHG ...

43292 1 - 171235050 - 171235336 3 102

CTG ...

LQA ...

43294 19 - 6977873 - 6978450 4 159

GTG ...

VSS ...

43296 19 - 7427757 - 7431023 4 216

TTG ...

LSS ...

43298 19 - 7199194 - 7199478 2 153

TTG ...

LWS ...

43300 19 + 4097924 - 4098565 3 282

GTG ...

VAK ...

43302 19 - 5365952 - 5366604 2 42

GTG ...

VAR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5