Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

43088 19 - 5902298 - 5902465 1 168

CTG ...

LPN ...

43090 19 - 4037881 - 4037910 1 30

CTG ...

LST ...

43093 19 + 4097889 - 4097921 1 33

TTG ...

LVR ...

43095 19 + 6051524 - 6051601 1 78

CTG ...

LDA ...

43097 19 - 4036744 - 4036785 1 42

ATG ...

MGK ...

43099 19 + 53625095 - 53625166 1 72

TTG ...

LLL ...

43101 19 - 6909379 - 6909636 1 258

CTG ...

LRQ ...

43103 19 + 44294206 - 44294304 1 99

TTG ...

LIN ...

43105 19 + 38946821 - 38950388 2 249

GTG ...

VVT ...

43107 1 + 84896591 - 84900185 2 261

CTG ...

LKI ...

43109 19 - 46382403 - 46385101 4 231

CTG ...

LSS ...

43111 19 + 8890028 - 8890520 2 183

CTG ...

LSG ...

43114 19 + 25546077 - 25559870 2 30

CTG ...

LLR ...

43116 19 - 60873179 - 60874457 2 111

CTG ...

LRE ...

43118 19 - 34251852 - 34252549 2 132

GTG ...

VKR ...

43120 19 + 8742137 - 8742301 3 66

GTG ...

VAV ...

43122 19 + 53233631 - 53234791 3 198

ATG ...

MSP ...

43124 19 - 15909338 - 15914903 2 132

CTG ...

LGT ...

43127 19 + 8822894 - 8823294 2 111

ATG ...

MAE ...

43129 19 + 38946818 - 38950388 2 252

GTG ...

VVV ...

43131 19 - 6977873 - 6978474 4 183

CTG ...

LGA ...

43134 19 - 12778009 - 12778660 2 75

ATG ...

MFQ ...

43137 19 + 5367149 - 5368082 2 87

GTG ...

VDE ...

43139 19 - 5100780 - 5104927 3 210

ATG ...

MTL ...

43141 19 - 9116502 - 9118544 2 135

ATG ...

MLT ...

43143 1 + 85905329 - 85906452 2 105

ATG ...

MNV ...

43145 19 + 4097996 - 4098565 3 210

TTG ...

LTQ ...

43147 19 + 4097918 - 4098565 3 288

GTG ...

VSV ...

43149 19 + 10903420 - 10905132 3 246

TTG ...

LKN ...

43151 1 + 87297657 - 87309703 2 150

CTG ...

LVS ...

43153 19 - 52991591 - 52995444 2 153

GTG ...

VNA ...

43156 19 - 60864666 - 60865339 3 228

CTG ...

LCR ...

43158 19 + 3391110 - 3393928 4 198

CTG ...

LPG ...

43161 19 - 5100780 - 5105224 4 258

TTG ...

LVT ...

43163 19 + 26774203 - 26777370 3 282

GTG ...

VFK ...

43166 19 + 60814680 - 60821236 2 159

CTG ...

LLL ...

43169 19 + 20621669 - 20623361 2 99

ATG ...

MET ...

43171 19 - 5422920 - 5423418 3 144

ATG ...

MSL ...

43174 19 - 12778009 - 12778910 3 93

CTG ...

LIN ...

43176 19 - 10574971 - 10575252 2 51

TTG ...

LCC ...

43178 19 + 8742098 - 8742301 3 105

CTG ...

LTV ...

43180 19 - 53013405 - 53014655 2 144

GTG ...

VTV ...

43182 1 - 65013267 - 65014828 3 195

CTG ...

LIS ...

43185 19 + 6090396 - 6090728 2 210

TTG ...

LVP ...

43187 19 - 7229762 - 7229981 2 78

TTG ...

LMW ...

43189 19 - 7432535 - 7434976 2 102

CTG ...

LSF ...

43191 19 - 37303655 - 37309852 3 192

TTG ...

LEE ...

43193 19 - 53013405 - 53014631 2 120

CTG ...

LDS ...

43195 19 - 5100780 - 5105221 4 255

GTG ...

VTP ...

43197 19 - 7199965 - 7204430 4 237

ATG ...

MKP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5