Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42981 19 - 7431972 - 7432004 1 33

TTG ...

LVL ...

42983 1 + 42896097 - 42898252 2 84

CTG ...

LIG ...

42986 19 - 5898555 - 5898599 1 45

CTG ...

LKE ...

42988 19 - 9116502 - 9116546 1 45

TTG ...

LSI ...

42990 19 + 6371344 - 6371439 1 96

TTG ...

LKR ...

42992 19 + 29047765 - 29048034 1 270

GTG ...

VPL ...

42994 1 - 156432892 - 156435863 3 261

TTG ...

LPF ...

42996 19 + 3392128 - 3392265 1 138

GTG ...

VCQ ...

42998 19 + 46366340 - 46366369 1 30

GTG ...

VSP ...

43000 1 + 74349364 - 74349769 2 93

ATG ...

MGA ...

43002 19 + 60811879 - 60811938 1 60

ATG ...

MGW ...

43004 19 + 44294317 - 44294367 1 51

TTG ...

LSL ...

43006 19 + 5368064 - 5368168 1 105

GTG ...

VAL ...

43008 19 - 3496518 - 3496580 1 63

TTG ...

LKP ...

43010 19 + 8767407 - 8767478 1 72

CTG ...

LYA ...

43012 19 + 6950700 - 6950804 1 105

ATG ...

MKG ...

43016 19 - 46892501 - 46892539 1 39

TTG ...

LEK ...

43018 19 + 6048461 - 6048673 1 213

CTG ...

LER ...

43020 19 - 41791765 - 41791806 1 42

CTG ...

LEG ...

43022 19 + 6052350 - 6052487 1 138

GTG ...

VNP ...

43024 19 - 55097580 - 55097624 1 45

ATG ...

MVW ...

43028 19 + 10183162 - 10183281 1 120

ATG ...

MAR ...

43030 19 - 7432475 - 7432519 1 45

ATG ...

MST ...

43032 19 + 20630672 - 20630776 1 105

TTG ...

LLL ...

43034 19 + 25505954 - 25506169 1 216

CTG ...

LPG ...

43036 19 + 44301272 - 44301310 1 39

CTG ...

LLG ...

43038 1 - 135108624 - 135109011 2 165

CTG ...

LLQ ...

43040 19 + 26751968 - 26752045 1 78

TTG ...

LSP ...

43042 19 + 3889037 - 3889114 1 78

TTG ...

LEG ...

43044 19 - 5905368 - 5905427 1 60

CTG ...

LGE ...

43046 19 - 41238697 - 41238753 1 57

TTG ...

LAL ...

43048 19 + 36411987 - 36412085 1 99

GTG ...

VML ...

43050 19 - 6069013 - 6069147 1 135

GTG ...

VGL ...

43052 19 + 46269800 - 46269985 1 186

GTG ...

VWS ...

43054 1 - 156432892 - 156435815 3 213

TTG ...

LVT ...

43056 19 + 8771151 - 8771222 1 72

TTG ...

LDC ...

43058 19 + 6051494 - 6051601 1 108

CTG ...

LQS ...

43061 1 + 69873216 - 69873485 2 54

CTG ...

LTS ...

43063 19 + 26647064 - 26647174 1 111

CTG ...

LPG ...

43065 19 - 60871475 - 60871540 1 66

CTG ...

LSP ...

43067 19 + 20621669 - 20621734 1 66

ATG ...

MET ...

43069 19 - 5730369 - 5730467 1 99

CTG ...

LGS ...

43071 19 + 23893608 - 23893661 1 54

ATG ...

MSR ...

43074 19 - 60873179 - 60873262 1 84

TTG ...

LLV ...

43076 19 + 8841130 - 8841294 1 165

ATG ...

MAK ...

43078 19 + 26671129 - 26671203 1 75

CTG ...

LLD ...

43080 1 - 178329332 - 178330238 4 222

CTG ...

LAE ...

43082 19 + 8841184 - 8841294 1 111

CTG ...

LGP ...

43084 19 + 10895333 - 10895419 1 87

CTG ...

LST ...

43086 19 - 7482935 - 7482982 1 48

CTG ...

LPR ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5