Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42873 19 + 20630678 - 20630776 1 99

TTG ...

LSL ...

42875 19 - 60873179 - 60873253 1 75

ATG ...

MQV ...

42877 19 + 42113073 - 42113108 1 36

ATG ...

MTV ...

42880 19 - 5422920 - 5422985 1 66

TTG ...

LPP ...

42882 19 - 53012181 - 53012279 1 99

CTG ...

LKD ...

42884 19 + 46267260 - 46267409 1 150

CTG ...

LQE ...

42886 19 + 6371278 - 6371439 1 162

CTG ...

LNQ ...

42890 1 + 180600355 - 180601074 3 123

CTG ...

LGT ...

42893 19 - 23214653 - 23214691 1 39

CTG ...

LKK ...

42895 19 + 21276526 - 21276576 1 51

CTG ...

LFA ...

42897 19 + 45006686 - 45006793 1 108

CTG ...

LGA ...

42899 19 + 3404110 - 3404163 1 54

CTG ...

LLN ...

42901 19 + 8823569 - 8823640 1 72

ATG ...

MEA ...

42903 19 - 37290666 - 37290701 1 36

ATG ...

MTS ...

42905 19 - 7431989 - 7432021 1 33

GTG ...

VAD ...

42907 19 + 29047831 - 29048034 1 204

GTG ...

VAG ...

42909 19 - 46668668 - 46668754 1 87

CTG ...

LEA ...

42911 19 - 7199965 - 7200021 1 57

CTG ...

LMA ...

42913 19 + 10606908 - 10606997 1 90

ATG ...

MWS ...

42915 19 + 5088567 - 5088644 1 78

ATG ...

MAA ...

42917 19 + 44294127 - 44294333 1 207

TTG ...

LAS ...

42919 19 - 5902050 - 5902172 1 123

GTG ...

VKT ...

42921 19 - 5100425 - 5100487 1 63

CTG ...

LQR ...

42923 19 + 4193031 - 4193117 1 87

ATG ...

MAS ...

42925 1 + 93500471 - 93501546 2 129

TTG ...

LKS ...

42927 19 + 60814635 - 60814814 1 180

CTG ...

LWV ...

42929 1 - 178333106 - 178333578 2 36

CTG ...

LVT ...

42931 19 + 20630693 - 20630776 1 84

ATG ...

MEC ...

42933 19 + 8764538 - 8764651 1 114

CTG ...

LDD ...

42935 19 - 6907895 - 6908047 1 153

CTG ...

LFK ...

42937 19 + 26640621 - 26640653 1 33

GTG ...

VEI ...

42939 1 - 171288891 - 171289293 3 204

GTG ...

VSM ...

42942 19 + 37413188 - 37413226 1 39

CTG ...

LLR ...

42945 19 + 45006743 - 45006793 1 51

ATG ...

MRL ...

42947 19 + 44294048 - 44294209 1 162

TTG ...

LAR ...

42949 19 + 29047747 - 29048034 1 288

GTG ...

VMR ...

42951 19 + 8942135 - 8942191 1 57

CTG ...

LAS ...

42953 1 - 65028559 - 65030600 2 48

GTG ...

VLG ...

42955 19 - 7432535 - 7432579 1 45

ATG ...

MWT ...

42957 19 - 53011716 - 53011883 1 168

CTG ...

LRS ...

42959 19 - 7215358 - 7215474 1 117

TTG ...

LGS ...

42962 19 + 8947381 - 8947458 1 78

CTG ...

LFE ...

42964 19 - 6069013 - 6069138 1 126

CTG ...

LYE ...

42967 19 - 9113065 - 9113142 1 78

GTG ...

VAS ...

42969 19 - 53000381 - 53000410 1 30

TTG ...

LTP ...

42971 19 + 44295161 - 44295190 1 30

CTG ...

LQA ...

42973 19 - 7434902 - 7435039 1 138

GTG ...

VWS ...

42975 19 + 8837745 - 8837795 1 51

CTG ...

LDM ...

42977 19 + 6048497 - 6048673 1 177

TTG ...

LAF ...

42979 19 - 15906926 - 15906991 1 66

TTG ...

LEK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5