Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42772 19 + 10206481 - 10206567 1 87

CTG ...

LTV ...

42774 19 + 36412002 - 36412085 1 84

CTG ...

LRS ...

42776 19 + 8742143 - 8742196 1 54

GTG ...

VGS ...

42778 19 + 20630675 - 20630776 1 102

CTG ...

LLS ...

42780 19 + 6050009 - 6050095 1 87

CTG ...

LYM ...

42782 1 - 180999885 - 181002013 4 234

TTG ...

LLM ...

42784 19 - 46669113 - 46669184 1 72

CTG ...

LNW ...

42786 19 - 60873179 - 60873226 1 48

CTG ...

LPQ ...

42788 19 + 32758008 - 32758109 1 102

TTG ...

LPG ...

42790 19 + 10206457 - 10206567 1 111

GTG ...

VNP ...

42792 19 - 5905368 - 5905538 1 171

CTG ...

LKK ...

42794 19 - 7235059 - 7235094 1 36

CTG ...

LCV ...

42796 19 + 26676643 - 26676801 1 159

CTG ...

LEW ...

42798 1 + 70724871 - 70724942 1 72

GTG ...

VVF ...

42800 19 - 9134761 - 9134967 1 207

GTG ...

VVV ...

42802 19 + 29047912 - 29048034 1 123

CTG ...

LAA ...

42804 19 - 6941234 - 6941389 1 156

CTG ...

LRV ...

42806 19 - 9118611 - 9118646 1 36

TTG ...

LQK ...

42808 19 + 44294950 - 44295027 1 78

CTG ...

LGD ...

42811 19 - 33391974 - 33392072 1 99

ATG ...

MSR ...

42813 19 - 7429737 - 7429784 1 48

TTG ...

LPG ...

42815 19 + 3388922 - 3389080 1 159

GTG ...

VSL ...

42817 19 - 41791831 - 41791983 1 153

ATG ...

MTL ...

42819 19 - 5904214 - 5904273 1 60

CTG ...

LED ...

42821 19 - 60870000 - 60870062 1 63

TTG ...

LQF ...

42823 19 + 6294429 - 6294668 1 240

CTG ...

LGK ...

42825 19 + 8942042 - 8942191 1 150

CTG ...

LLG ...

42827 19 - 8713338 - 8713418 1 81

GTG ...

VVA ...

42829 19 - 9116537 - 9116587 1 51

CTG ...

LQR ...

42831 19 - 46668668 - 46668841 1 174

GTG ...

VKR ...

42833 19 + 46170678 - 46170740 1 63

CTG ...

LHS ...

42835 19 + 46366334 - 46366369 1 36

ATG ...

MSV ...

42837 19 - 5730355 - 5730429 1 75

CTG ...

LWA ...

42839 19 - 53000381 - 53000452 1 72

CTG ...

LRR ...

42841 19 - 4832829 - 4832873 1 45

CTG ...

LME ...

42843 19 + 20634350 - 20634484 1 135

TTG ...

LTR ...

42845 19 - 6137726 - 6137836 1 111

TTG ...

LDN ...

42847 19 - 7482935 - 7483216 1 282

CTG ...

LSE ...

42849 19 + 26651606 - 26651740 1 135

GTG ...

VAG ...

42851 19 + 44294119 - 44294190 1 72

CTG ...

LRF ...

42853 19 + 3404068 - 3404163 1 96

CTG ...

LKL ...

42855 1 - 36576764 - 36600157 4 294

GTG ...

VQF ...

42857 19 + 8947095 - 8947151 1 57

TTG ...

LHM ...

42859 19 - 9116502 - 9116531 1 30

TTG ...

LAE ...

42861 19 + 47865866 - 47865928 1 63

CTG ...

LPP ...

42863 19 + 6048539 - 6048673 1 135

GTG ...

VAL ...

42865 19 + 41933605 - 41933634 1 30

GTG ...

VGG ...

42867 19 + 8947041 - 8947151 1 111

GTG ...

VGT ...

42869 19 - 5904214 - 5904309 1 96

GTG ...

VSS ...

42871 19 - 37271534 - 37271569 1 36

CTG ...

LLL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5