Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42664 19 + 18713568 - 18713615 1 48

CTG ...

LAS ...

42666 19 + 26654407 - 26654535 1 129

TTG ...

LQQ ...

42669 19 + 37207748 - 37207777 1 30

GTG ...

VAG ...

42672 19 + 44294108 - 44294209 1 102

GTG ...

VAA ...

42674 19 + 29047792 - 29048034 1 243

ATG ...

MIT ...

42676 19 - 44069268 - 44069324 1 57

CTG ...

LYA ...

42678 19 - 4832829 - 4832891 1 63

GTG ...

VGT ...

42680 1 - 93798376 - 93798408 1 33

CTG ...

LGL ...

42683 19 + 44301266 - 44301310 1 45

CTG ...

LVL ...

42685 19 - 5904214 - 5904288 1 75

CTG ...

LDA ...

42687 19 + 8820176 - 8820400 1 225

CTG ...

LAR ...

42689 19 - 41238697 - 41238729 1 33

CTG ...

LCL ...

42691 19 - 41791831 - 41791935 1 105

TTG ...

LWR ...

42693 19 - 9114226 - 9114291 1 66

CTG ...

LEV ...

42695 19 - 33168402 - 33168449 1 48

TTG ...

LEF ...

42697 19 + 20634386 - 20634484 1 99

TTG ...

LRV ...

42699 19 + 8947270 - 8947458 1 189

TTG ...

LQR ...

42701 19 + 21276471 - 21276614 1 144

CTG ...

LCS ...

42703 19 - 29645941 - 29646186 1 246

TTG ...

LEQ ...

42705 19 - 9116502 - 9116597 1 96

TTG ...

LPW ...

42707 19 - 53006172 - 53006228 1 57

CTG ...

LTC ...

42710 19 - 4923680 - 4923757 1 78

CTG ...

LQG ...

42712 19 - 4009282 - 4009455 1 174

GTG ...

VVR ...

42714 19 - 7228021 - 7228050 1 30

GTG ...

VGR ...

42716 19 + 25506041 - 25506169 1 129

CTG ...

LEA ...

42718 19 + 45047813 - 45047869 1 57

GTG ...

VMA ...

42720 19 - 41791831 - 41791863 1 33

TTG ...

LIC ...

42722 19 + 3388907 - 3389080 1 174

CTG ...

LDG ...

42724 1 - 121319961 - 121327720 2 42

GTG ...

VNW ...

42726 19 - 41238697 - 41238747 1 51

CTG ...

LDV ...

42728 19 + 44931127 - 44931336 1 210

ATG ...

MVL ...

42730 19 - 5905368 - 5905472 1 105

CTG ...

LEK ...

42732 1 - 75478385 - 75479060 2 297

GTG ...

VAV ...

42735 19 + 4193022 - 4193117 1 96

GTG ...

VTS ...

42737 19 + 41933578 - 41933634 1 57

CTG ...

LGP ...

42739 19 + 10900358 - 10900402 1 45

CTG ...

LKS ...

42741 19 - 44069268 - 44069336 1 69

GTG ...

VAI ...

42743 19 + 53625098 - 53625166 1 69

CTG ...

LLF ...

42746 19 + 3884545 - 3884589 1 45

TTG ...

LAS ...

42749 19 - 33168318 - 33168356 1 39

TTG ...

LLP ...

42751 19 + 38946737 - 38946895 1 159

CTG ...

LYH ...

42753 19 + 29047828 - 29048034 1 207

ATG ...

MVA ...

42755 19 + 10207225 - 10207290 1 66

GTG ...

VAS ...

42757 19 + 46268803 - 46268865 1 63

GTG ...

VNG ...

42759 19 + 4962883 - 4962972 1 90

GTG ...

VSL ...

42761 19 + 26696194 - 26696226 1 33

CTG ...

LGY ...

42763 19 - 41954462 - 41954497 1 36

CTG ...

LTF ...

42765 19 - 7035513 - 7035602 1 90

ATG ...

MCS ...

42768 19 + 10204227 - 10204268 1 42

GTG ...

VAD ...

42770 19 + 26691354 - 26691491 1 138

GTG ...

VIK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5