Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42554 19 + 46268012 - 46268140 1 129

CTG ...

LRL ...

42556 19 + 26683878 - 26683937 1 60

CTG ...

LRR ...

42558 19 - 5902050 - 5902187 1 138

GTG ...

VMM ...

42561 19 + 10895325 - 10895459 1 135

CTG ...

LGS ...

42564 19 + 38935471 - 38935554 1 84

TTG ...

LLE ...

42566 19 - 4832829 - 4832870 1 42

ATG ...

MEH ...

42568 19 - 7204386 - 7204451 1 66

GTG ...

VLT ...

42570 19 + 9982958 - 9982987 1 30

ATG ...

MPP ...

42573 1 - 86357338 - 86358258 3 267

CTG ...

LKM ...

42575 19 + 6061750 - 6061782 1 33

TTG ...

LLK ...

42577 19 + 25505969 - 25506169 1 201

CTG ...

LER ...

42579 19 + 16316029 - 16316172 1 144

TTG ...

LVR ...

42582 19 - 5902050 - 5902202 1 153

CTG ...

LQF ...

42584 1 - 75316794 - 75317363 2 39

CTG ...

LER ...

42587 19 + 20630723 - 20630776 1 54

GTG ...

VSQ ...

42589 19 + 26751911 - 26752045 1 135

GTG ...

VKE ...

42591 19 - 7430982 - 7431023 1 42

TTG ...

LSS ...

42593 19 - 6134667 - 6134792 1 126

CTG ...

LDS ...

42595 19 + 26683863 - 26683937 1 75

CTG ...

LRP ...

42597 19 + 3889034 - 3889114 1 81

TTG ...

LLE ...

42599 19 + 44294908 - 44295027 1 120

CTG ...

LAL ...

42601 19 + 38946821 - 38946895 1 75

GTG ...

VVT ...

42603 19 + 38946818 - 38946895 1 78

GTG ...

VVV ...

42605 19 - 47037255 - 47037311 1 57

GTG ...

VGI ...

42607 19 + 46269782 - 46269985 1 204

CTG ...

LVR ...

42609 19 + 8841220 - 8841294 1 75

ATG ...

MTH ...

42611 19 - 8797232 - 8797294 1 63

TTG ...

LFS ...

42613 19 + 8837715 - 8837795 1 81

ATG ...

MSN ...

42615 19 + 3864667 - 3864798 1 132

CTG ...

LFQ ...

42617 1 - 178329332 - 178330292 4 276

GTG ...

VAV ...

42620 1 + 42896145 - 42898252 2 36

GTG ...

VEK ...

42622 19 - 23218401 - 23218436 1 36

CTG ...

LTK ...

42624 19 + 6061678 - 6061782 1 105

TTG ...

LRS ...

42626 19 - 33202475 - 33202555 1 81

GTG ...

VSL ...

42629 19 - 33202495 - 33202542 1 48

CTG ...

LPL ...

42631 19 + 4762573 - 4762638 1 66

CTG ...

LYD ...

42633 19 - 29645941 - 29646204 1 264

CTG ...

LTV ...

42635 19 + 26676676 - 26676801 1 126

CTG ...

LNG ...

42637 19 - 53012181 - 53012249 1 69

CTG ...

LVS ...

42639 19 + 44294112 - 44294333 1 222

CTG ...

LQA ...

42642 1 - 178329332 - 178330271 4 255

TTG ...

LAI ...

42644 19 + 60814641 - 60814814 1 174

GTG ...

VWC ...

42646 19 - 7204386 - 7204430 1 45

ATG ...

MKP ...

42648 19 + 44294066 - 44294209 1 144

ATG ...

MRC ...

42651 19 - 12501178 - 12501348 1 171

CTG ...

LRL ...

42653 19 - 42086224 - 42086340 1 117

ATG ...

MAA ...

42655 19 - 5961117 - 5961167 1 51

GTG ...

VSS ...

42657 19 + 9982925 - 9982987 1 63

CTG ...

LPS ...

42660 19 - 10604164 - 10604250 1 87

CTG ...

LVA ...

42662 1 - 171235050 - 171235354 3 120

CTG ...

LLP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5