Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42443 19 - 41954462 - 41954506 1 45

CTG ...

LYR ...

42446 19 + 3852271 - 3852462 1 192

CTG ...

LPP ...

42448 19 + 3886441 - 3886470 1 30

CTG ...

LPL ...

42450 19 + 26640522 - 26640653 1 132

GTG ...

VQQ ...

42452 19 - 44406691 - 44406726 1 36

CTG ...

LHL ...

42455 19 - 53006172 - 53006249 1 78

GTG ...

VSS ...

42457 19 + 8749966 - 8750031 1 66

CTG ...

LGS ...

42459 19 + 3388928 - 3389080 1 153

CTG ...

LFS ...

42461 19 + 38950296 - 38950388 1 93

TTG ...

LTG ...

42463 19 + 4151419 - 4151526 1 108

CTG ...

LQE ...

42465 19 + 8764320 - 8764382 1 63

CTG ...

LRI ...

42467 1 + 70493865 - 70724942 2 219

GTG ...

VGP ...

42469 19 + 38940484 - 38940516 1 33

TTG ...

LMG ...

42471 19 + 26654449 - 26654535 1 87

GTG ...

VWE ...

42473 19 - 5961117 - 5961203 1 87

GTG ...

VFY ...

42475 19 + 4762609 - 4762638 1 30

GTG ...

VDR ...

42478 19 - 10575217 - 10575477 1 261

TTG ...

LEK ...

42480 19 - 9114226 - 9114267 1 42

TTG ...

LEP ...

42482 19 - 5609228 - 5609353 1 126

ATG ...

MGD ...

42485 19 - 6909894 - 6909953 1 60

CTG ...

LKR ...

42487 1 + 6214902 - 6227997 2 114

ATG ...

MVR ...

42490 19 - 6137722 - 6137796 1 75

ATG ...

MEK ...

42492 19 + 44294058 - 44294333 1 276

ATG ...

MGQ ...

42494 1 + 164345379 - 164348181 3 177

GTG ...

VRN ...

42497 19 - 9134761 - 9134913 1 153

CTG ...

LVR ...

42499 19 - 5906453 - 5906629 1 177

TTG ...

LAS ...

42501 19 - 8797232 - 8797273 1 42

GTG ...

VKW ...

42503 19 + 18713487 - 18713615 1 129

CTG ...

LRP ...

42506 19 + 5490575 - 5490613 1 39

CTG ...

LSP ...

42508 19 + 26683860 - 26683937 1 78

GTG ...

VLR ...

42510 19 - 7431972 - 7432001 1 30

GTG ...

VLF ...

42512 1 - 151478584 - 151500778 3 102

TTG ...

LIL ...

42514 19 + 8764502 - 8764651 1 150

TTG ...

LSL ...

42516 19 + 21276521 - 21276565 1 45

GTG ...

VFC ...

42518 19 - 5728720 - 5728827 1 108

GTG ...

VGP ...

42521 19 + 38950311 - 38950388 1 78

TTG ...

LQN ...

42523 19 + 46366319 - 46366369 1 51

ATG ...

MVG ...

42526 19 + 5367134 - 5367214 1 81

CTG ...

LSR ...

42528 19 - 34252421 - 34252507 1 87

CTG ...

LGS ...

42530 19 - 5907049 - 5907096 1 48

CTG ...

LNV ...

42532 19 + 46270298 - 46270378 1 81

GTG ...

VFD ...

42534 19 - 24961473 - 24961559 1 87

CTG ...

LES ...

42536 19 - 46896504 - 46896539 1 36

TTG ...

LKI ...

42539 19 - 10082549 - 10082593 1 45

TTG ...

LSL ...

42541 19 - 24304031 - 24304060 1 30

ATG ...

MMP ...

42544 19 + 41933533 - 41933634 1 102

CTG ...

LWA ...

42546 19 - 5688371 - 5688448 1 78

TTG ...

LPC ...

42548 19 - 41246735 - 41246800 1 66

TTG ...

LLV ...

42550 19 + 3852340 - 3852462 1 123

CTG ...

LWC ...

42552 19 + 12462580 - 12462609 1 30

TTG ...

LVC ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5