Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42334 19 + 3375136 - 3375213 1 78

ATG ...

MDT ...

42337 19 - 7434902 - 7434964 1 63

CTG ...

LCR ...

42339 19 - 42086224 - 42086325 1 102

GTG ...

VAE ...

42342 19 - 5423764 - 5423829 1 66

CTG ...

LTC ...

42345 19 + 38943795 - 38944019 1 225

TTG ...

LSQ ...

42347 19 - 44069268 - 44069348 1 81

GTG ...

VVG ...

42350 19 + 21272363 - 21272467 1 105

CTG ...

LAN ...

42352 19 + 45047783 - 45047869 1 87

CTG ...

LLL ...

42354 19 - 15909338 - 15909457 1 120

CTG ...

LVL ...

42356 19 + 4151637 - 4151732 1 96

CTG ...

LNT ...

42358 19 + 41933590 - 41933634 1 45

CTG ...

LEG ...

42361 19 + 8904942 - 8904977 1 36

TTG ...

LCW ...

42363 19 - 10091737 - 10091784 1 48

GTG ...

VSW ...

42365 19 - 32674300 - 32674353 1 54

ATG ...

MKS ...

42367 19 + 36887090 - 36887200 1 111

TTG ...

LWE ...

42369 19 + 5477585 - 5477695 1 111

TTG ...

LHD ...

42372 19 - 41791765 - 41791797 1 33

CTG ...

LAQ ...

42374 19 + 21276514 - 21276576 1 63

ATG ...

MEC ...

42376 19 + 8763730 - 8763843 1 114

GTG ...

VED ...

42378 19 + 6052380 - 6052487 1 108

GTG ...

VVS ...

42380 19 + 46268042 - 46268140 1 99

CTG ...

LEA ...

42382 19 + 10186798 - 10186887 1 90

ATG ...

MPS ...

42384 19 - 5731179 - 5731316 1 138

CTG ...

LQD ...

42387 19 - 5366564 - 5366629 1 66

TTG ...

LRS ...

42390 19 + 6050006 - 6050095 1 90

CTG ...

LLY ...

42392 19 - 7432475 - 7432534 1 60

ATG ...

MLR ...

42394 19 - 41256175 - 41256246 1 72

GTG ...

VWG ...

42396 19 + 32758017 - 32758109 1 93

CTG ...

LGT ...

42398 19 - 5422920 - 5422991 1 72

CTG ...

LPL ...

42401 1 + 84881119 - 84881208 1 90

CTG ...

LRS ...

42403 19 + 60811909 - 60811938 1 30

TTG ...

LFA ...

42405 19 + 3852199 - 3852462 1 264

CTG ...

LES ...

42407 19 - 7199965 - 7200018 1 54

ATG ...

MAT ...

42409 19 + 38950353 - 38950388 1 36

TTG ...

LLP ...

42411 19 - 7204386 - 7204433 1 48

ATG ...

MMK ...

42413 19 + 8754943 - 8755068 1 126

GTG ...

VEA ...

42415 19 + 46269812 - 46269985 1 174

CTG ...

LLH ...

42417 19 - 34252421 - 34252564 1 144

CTG ...

LLQ ...

42419 1 - 16647997 - 16656867 2 57

GTG ...

VAV ...

42421 19 - 7229762 - 7229803 1 42

ATG ...

MKC ...

42423 19 + 6184506 - 6184586 1 81

CTG ...

LRC ...

42425 1 + 70724811 - 70724942 1 132

CTG ...

LDL ...

42427 19 + 20621705 - 20621734 1 30

TTG ...

LEC ...

42429 19 + 4150451 - 4150648 1 198

GTG ...

VVL ...

42431 19 + 44303046 - 44303273 1 228

CTG ...

LPV ...

42433 19 - 5730369 - 5730521 1 153

GTG ...

VAS ...

42435 19 - 34252421 - 34252480 1 60

GTG ...

VMM ...

42437 1 + 191596932 - 191597024 1 93

GTG ...

VKR ...

42439 19 + 53236682 - 53236771 1 90

CTG ...

LPS ...

42441 19 + 6061699 - 6061782 1 84

CTG ...

LRG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5