Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

43625 19 - 5287134 - 5287569 2 186

CTG ...

LRR ...

43627 19 - 6978405 - 6978615 2 90

TTG ...

LFS ...

43629 19 - 41784379 - 41784824 2 87

CTG ...

LPI ...

43631 19 + 20624761 - 20629066 2 78

CTG ...

LQG ...

43633 1 - 118304767 - 118305303 2 108

TTG ...

LAV ...

43635 19 - 32687316 - 32695820 2 36

ATG ...

MDW ...

43637 1 - 36144226 - 36146203 3 198

GTG ...

VLV ...

43639 19 - 5422920 - 5423412 3 138

CTG ...

LRI ...

43641 19 + 8741548 - 8742258 2 33

GTG ...

VVV ...

43643 19 + 3714617 - 3715676 2 48

CTG ...

LSL ...

43645 19 - 33138238 - 33168356 2 72

TTG ...

LLP ...

43647 19 - 7427757 - 7429802 3 171

TTG ...

LTT ...

43649 19 - 5422920 - 5423397 3 123

CTG ...

LMG ...

43651 19 - 37303655 - 37303995 2 126

GTG ...

VAI ...

43653 19 - 52997922 - 53000467 4 162

TTG ...

LLG ...

43655 19 - 7199965 - 7204239 3 279

GTG ...

VGL ...

43657 1 + 179685707 - 179685781 1 75

GTG ...

VAT ...

43659 19 - 41791831 - 41802008 2 219

GTG ...

VEG ...

43662 19 + 36409906 - 36411990 2 39

CTG ...

LGM ...

43664 19 - 53002526 - 53003807 3 129

ATG ...

MPL ...

43666 19 - 6978405 - 6978597 2 72

CTG ...

LAR ...

43668 19 + 8742131 - 8742301 3 72

CTG ...

LRV ...

43670 19 - 47086225 - 47090612 2 45

TTG ...

LKD ...

43672 19 - 8708214 - 8709255 3 231

CTG ...

LAA ...

43674 19 - 10064263 - 10064891 3 258

CTG ...

LPA ...

43676 19 - 8709586 - 8709817 3 126

ATG ...

MLI ...

43678 19 + 40911084 - 40911501 2 30

CTG ...

LAP ...

43680 1 + 134560514 - 134585220 2 96

CTG ...

LGS ...

43682 19 + 5367161 - 5368082 2 75

CTG ...

LSP ...

43684 19 - 4923186 - 4923781 3 117

CTG ...

LRR ...

43686 19 - 7199965 - 7204218 3 258

ATG ...

MAT ...

43688 19 - 20693463 - 20696421 3 159

CTG ...

LCF ...

43691 19 - 60871475 - 60873163 2 123

CTG ...

LPL ...

43693 19 + 4097972 - 4098565 3 234

CTG ...

LRS ...

43695 19 - 41791831 - 41801981 2 192

CTG ...

LAG ...

43697 19 - 15909338 - 15914921 2 150

TTG ...

LTT ...

43699 19 + 4097942 - 4098565 3 264

ATG ...

MAE ...

43701 19 + 6090486 - 6090728 2 120

GTG ...

VKE ...

43703 19 - 8709586 - 8709796 3 105

TTG ...

LSP ...

43705 19 - 47034629 - 47042819 5 297

TTG ...

LIN ...

43707 19 - 7427757 - 7431089 5 282

GTG ...

VSV ...

43709 19 + 53233661 - 53234791 3 168

TTG ...

LMR ...

43712 19 + 8741542 - 8742258 2 39

GTG ...

VAV ...

43714 19 + 26776115 - 26777370 2 165

GTG ...

VKI ...

43716 19 - 53002526 - 53002727 2 75

GTG ...

VAL ...

43718 19 + 6090351 - 6090728 2 255

GTG ...

VCS ...

43720 19 + 40911081 - 40911501 2 33

ATG ...

MLA ...

43722 1 - 160257252 - 160257541 3 114

CTG ...

LQV ...

43725 19 - 46382403 - 46385065 3 195

GTG ...

VSW ...

43727 19 - 47086225 - 47090615 2 48

TTG ...

LLK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5