Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

42005 19 + 45006725 - 45006793 1 69

ATG ...

MQK ...

42008 19 - 10575217 - 10575402 1 186

ATG ...

MYP ...

42010 19 + 8942071 - 8942127 1 57

CTG ...

LEP ...

42012 19 + 10207222 - 10207290 1 69

TTG ...

LVA ...

42014 19 - 41246735 - 41246797 1 63

TTG ...

LVK ...

42016 1 + 127412235 - 127412264 1 30

ATG ...

MAK ...

42018 19 + 4152532 - 4152621 1 90

CTG ...

LHE ...

42020 1 - 54990445 - 54990483 1 39

CTG ...

LKH ...

42022 19 + 3886417 - 3886470 1 54

CTG ...

LHK ...

42024 19 - 5730485 - 5730544 1 60

CTG ...

LHL ...

42026 19 + 20601987 - 20602121 1 135

CTG ...

LCS ...

42028 19 - 7432475 - 7432531 1 57

CTG ...

LRW ...

42030 19 - 46669113 - 46669229 1 117

GTG ...

VGD ...

42032 1 + 75145001 - 75145120 1 120

TTG ...

LIQ ...

42034 19 + 20624740 - 20624829 1 90

TTG ...

LSL ...

42036 19 - 34255286 - 34255318 1 33

GTG ...

VEK ...

42038 19 - 46903936 - 46903968 1 33

TTG ...

LSL ...

42040 19 + 26647112 - 26647174 1 63

CTG ...

LKA ...

42042 1 - 39565046 - 39565138 1 93

CTG ...

LIF ...

42044 19 + 44294199 - 44294333 1 135

CTG ...

LVI ...

42046 19 - 8713338 - 8713415 1 78

GTG ...

VAQ ...

42049 19 - 4009282 - 4009452 1 171

GTG ...

VRG ...

42051 19 + 4193043 - 4193117 1 75

ATG ...

MTF ...

42053 1 - 66854620 - 66854742 1 123

GTG ...

VSR ...

42055 19 + 20640105 - 20640146 1 42

GTG ...

VDS ...

42057 1 + 87433809 - 87433922 1 114

TTG ...

LEL ...

42059 19 - 4121508 - 4121540 1 33

ATG ...

MAL ...

42062 19 + 8820031 - 8820075 1 45

GTG ...

VCR ...

42064 19 + 46152727 - 46152765 1 39

CTG ...

LDM ...

42067 19 - 53932163 - 53932195 1 33

CTG ...

LHP ...

42070 19 + 26640408 - 26640653 1 246

CTG ...

LSG ...

42072 19 + 8764263 - 8764382 1 120

TTG ...

LVA ...

42074 1 - 156432892 - 156435812 3 210

GTG ...

VTG ...

42077 19 - 10201044 - 10201094 1 51

TTG ...

LLL ...

42080 1 - 178330583 - 178330795 1 213

TTG ...

LNF ...

42082 19 + 44294253 - 44294333 1 81

CTG ...

LPA ...

42084 19 + 53245172 - 53245294 1 123

CTG ...

LKR ...

42086 19 + 8820173 - 8820400 1 228

GTG ...

VLA ...

42088 19 + 10903638 - 10903805 1 168

GTG ...

VKS ...

42090 19 - 5801213 - 5801260 1 48

ATG ...

MVK ...

42092 19 + 8771106 - 8771222 1 117

ATG ...

MCC ...

42095 19 + 10902715 - 10902750 1 36

CTG ...

LTS ...

42097 19 + 26654446 - 26654535 1 90

CTG ...

LVW ...

42099 19 + 6184494 - 6184586 1 93

GTG ...

VAT ...

42102 1 + 84896588 - 84900185 2 264

CTG ...

LLK ...

42105 19 - 41238769 - 41238798 1 30

ATG ...

MCS ...

42107 19 - 41791831 - 41792013 1 183

GTG ...

VMP ...

42109 19 - 6907503 - 6907613 1 111

GTG ...

VAC ...

42111 1 + 74347733 - 74349769 4 240

CTG ...

LWT ...

42113 19 + 20602022 - 20602060 1 39

CTG ...

LHN ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5