Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41896 19 - 5902578 - 5902709 1 132

CTG ...

LAE ...

41898 1 + 160906644 - 160906673 1 30

GTG ...

VAT ...

41900 19 - 46558234 - 46558269 1 36

CTG ...

LKT ...

41903 19 - 60870000 - 60870029 1 30

TTG ...

LPG ...

41905 19 - 5730369 - 5730449 1 81

TTG ...

LET ...

41907 19 - 3496518 - 3496559 1 42

TTG ...

LDL ...

41909 1 + 87374033 - 87374143 1 111

CTG ...

LRL ...

41911 1 - 86546598 - 86546735 1 138

TTG ...

LNF ...

41913 19 - 10943170 - 10943247 1 78

TTG ...

LRS ...

41916 19 - 5898555 - 5898602 1 48

CTG ...

LLK ...

41918 19 + 4151697 - 4151732 1 36

TTG ...

LEV ...

41921 19 + 3392104 - 3392265 1 162

TTG ...

LKS ...

41924 19 + 8947396 - 8947458 1 63

CTG ...

LEK ...

41926 19 + 44294274 - 44294333 1 60

TTG ...

LYR ...

41928 19 + 38931450 - 38931521 1 72

CTG ...

LEE ...

41930 19 - 45748835 - 45748867 1 33

GTG ...

VPY ...

41933 19 - 41791765 - 41791827 1 63

GTG ...

VKW ...

41935 19 + 53245079 - 53245117 1 39

ATG ...

MSK ...

41938 19 + 6050186 - 6050239 1 54

GTG ...

VTD ...

41940 19 - 5731306 - 5731548 1 243

GTG ...

VLQ ...

41942 1 - 33669708 - 33669752 1 45

CTG ...

LSA ...

41944 19 - 53012185 - 53012253 1 69

CTG ...

LAG ...

41946 19 + 26654437 - 26654535 1 99

CTG ...

LTN ...

41948 1 + 85894618 - 85894710 1 93

TTG ...

LHW ...

41950 19 - 12501178 - 12501330 1 153

GTG ...

VGR ...

41953 19 - 15917020 - 15917169 1 150

GTG ...

VEF ...

41955 19 + 44294091 - 44294333 1 243

CTG ...

LTP ...

41957 19 + 4150770 - 4150865 1 96

GTG ...

VFT ...

41960 19 + 10898995 - 10899186 1 192

CTG ...

LHS ...

41962 1 - 36632416 - 36632496 1 81

ATG ...

MAS ...

41964 19 - 10101219 - 10101257 1 39

GTG ...

VSS ...

41966 19 + 26691378 - 26691491 1 114

CTG ...

LQK ...

41968 19 + 8820146 - 8820400 1 255

GTG ...

VRA ...

41970 19 + 26691390 - 26691491 1 102

CTG ...

LYR ...

41972 19 - 5730485 - 5730595 1 111

GTG ...

VKA ...

41974 19 - 10575217 - 10575309 1 93

ATG ...

MTC ...

41976 19 + 3852358 - 3852462 1 105

CTG ...

LPG ...

41978 19 - 6941234 - 6941419 1 186

CTG ...

LTS ...

41980 19 + 60811903 - 60811938 1 36

CTG ...

LRL ...

41983 19 + 20630744 - 20630776 1 33

TTG ...

LLR ...

41985 19 - 5902298 - 5902471 1 174

TTG ...

LAL ...

41987 19 - 41774095 - 41774127 1 33

CTG ...

LLQ ...

41989 19 - 60766934 - 60766969 1 36

ATG ...

MRG ...

41991 19 - 5904225 - 5904302 1 78

GTG ...

VPG ...

41993 19 + 25505978 - 25506169 1 192

CTG ...

LEA ...

41995 19 + 6051449 - 6051601 1 153

CTG ...

LRA ...

41997 19 - 7199965 - 7200075 1 111

CTG ...

LHL ...

41999 1 - 135122267 - 135122479 1 213

CTG ...

LTL ...

42001 19 + 44301239 - 44301310 1 72

GTG ...

VLR ...

42003 19 + 38935507 - 38935554 1 48

TTG ...

LTK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5