Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41785 19 + 45513445 - 45513495 1 51

GTG ...

VKQ ...

41788 19 - 46669113 - 46669172 1 60

CTG ...

LAF ...

41790 19 - 7431972 - 7432007 1 36

ATG ...

MLV ...

41792 19 + 32758177 - 32758239 1 63

CTG ...

LRG ...

41795 19 + 8825005 - 8825112 1 108

TTG ...

LVR ...

41797 19 + 26751923 - 26752045 1 123

GTG ...

VEK ...

41799 19 + 26640564 - 26640653 1 90

CTG ...

LQQ ...

41801 19 - 8797232 - 8797261 1 30

ATG ...

MLW ...

41804 19 + 45076716 - 45076844 1 129

ATG ...

MLH ...

41806 19 + 45572443 - 45572484 1 42

GTG ...

VAD ...

41809 19 - 29645941 - 29646171 1 231

CTG ...

LIE ...

41812 19 - 10575217 - 10575447 1 231

CTG ...

LGR ...

41815 19 - 5898555 - 5898608 1 54

CTG ...

LDL ...

41817 19 - 15909297 - 15909407 1 111

CTG ...

LEW ...

41819 19 + 46269758 - 46269985 1 228

GTG ...

VMP ...

41821 19 + 8742113 - 8742196 1 84

GTG ...

VSR ...

41823 19 + 29047771 - 29048034 1 264

TTG ...

LPE ...

41825 19 - 7429737 - 7429790 1 54

TTG ...

LGL ...

41827 19 - 4832829 - 4832858 1 30

ATG ...

MGV ...

41830 19 - 9134761 - 9134964 1 204

GTG ...

VVV ...

41833 19 + 20624791 - 20624829 1 39

ATG ...

MST ...

41835 19 - 5118232 - 5118273 1 42

ATG ...

MEA ...

41838 19 - 9118611 - 9118658 1 48

GTG ...

VQR ...

41840 19 - 7434902 - 7435048 1 147

GTG ...

VLS ...

41842 19 - 33168402 - 33168458 1 57

CTG ...

LSH ...

41844 19 - 5382964 - 5383017 1 54

ATG ...

MRR ...

41846 19 + 6090396 - 6090548 1 153

TTG ...

LVP ...

41848 19 + 20634392 - 20634484 1 93

GTG ...

VGR ...

41850 1 + 153900022 - 153900063 1 42

CTG ...

LFT ...

41852 19 + 8771142 - 8771222 1 81

TTG ...

LPS ...

41854 19 - 6907895 - 6908062 1 168

GTG ...

VNL ...

41856 19 + 53236706 - 53236771 1 66

GTG ...

VLH ...

41858 1 + 153447939 - 153447998 1 60

CTG ...

LTI ...

41860 19 + 38946803 - 38946895 1 93

CTG ...

LQI ...

41862 19 - 5424843 - 5424884 1 42

TTG ...

LST ...

41865 19 + 20624746 - 20624829 1 84

CTG ...

LVM ...

41867 19 + 8764508 - 8764651 1 144

TTG ...

LNL ...

41869 1 + 78705257 - 78705292 1 36

TTG ...

LLC ...

41871 1 - 74283874 - 74283912 1 39

GTG ...

VRS ...

41873 19 + 8841151 - 8841294 1 144

GTG ...

VED ...

41875 19 + 6294495 - 6294668 1 174

CTG ...

LLI ...

41877 19 + 37207724 - 37207777 1 54

CTG ...

LGA ...

41879 19 + 44294172 - 44294333 1 162

CTG ...

LAS ...

41881 19 + 36857815 - 36858039 1 225

GTG ...

VNA ...

41883 19 - 23218401 - 23218439 1 39

GTG ...

VLT ...

41886 19 + 8764080 - 8764178 1 99

CTG ...

LIM ...

41888 19 + 26640507 - 26640653 1 147

GTG ...

VPG ...

41890 1 + 156059460 - 156059516 1 57

TTG ...

LEP ...

41892 19 - 9116502 - 9116555 1 54

CTG ...

LGG ...

41894 19 + 44294291 - 44294326 1 36

CTG ...

LQK ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5