Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41671 19 + 4963593 - 4963661 1 69

ATG ...

MCP ...

41673 19 + 53236700 - 53236771 1 72

ATG ...

MTV ...

41675 19 + 6061753 - 6061782 1 30

CTG ...

LKT ...

41677 19 - 7434902 - 7435006 1 105

CTG ...

LSP ...

41679 19 + 6294456 - 6294668 1 213

GTG ...

VVR ...

41681 19 + 26683836 - 26683937 1 102

TTG ...

LII ...

41683 19 + 10606917 - 10606997 1 81

CTG ...

LRR ...

41685 19 - 3496518 - 3496547 1 30

ATG ...

MNS ...

41688 19 - 34252421 - 34252549 1 129

GTG ...

VKR ...

41690 19 - 5801213 - 5801257 1 45

GTG ...

VKI ...

41692 19 + 20610930 - 20610971 1 42

ATG ...

MAQ ...

41694 19 + 20623324 - 20623374 1 51

GTG ...

VEF ...

41696 19 + 5367149 - 5367214 1 66

GTG ...

VDE ...

41698 19 + 5368106 - 5368168 1 63

CTG ...

LAS ...

41701 19 + 5041432 - 5041467 1 36

CTG ...

LGR ...

41706 19 - 46668668 - 46668733 1 66

GTG ...

VLR ...

41708 19 + 3852241 - 3852462 1 222

CTG ...

LPP ...

41710 1 - 93750738 - 93750782 1 45

CTG ...

LED ...

41712 19 + 8841202 - 8841294 1 93

CTG ...

LSP ...

41714 19 - 24961473 - 24961550 1 78

CTG ...

LVS ...

41716 19 - 6134667 - 6134798 1 132

CTG ...

LEL ...

41719 19 + 10206496 - 10206567 1 72

CTG ...

LAI ...

41722 19 - 5105174 - 5105224 1 51

TTG ...

LVT ...

41724 19 - 55097580 - 55097612 1 33

TTG ...

LHV ...

41727 19 - 9118611 - 9118661 1 51

ATG ...

MVQ ...

41729 19 + 44294323 - 44294367 1 45

CTG ...

LRS ...

41731 19 + 44295092 - 44295190 1 99

CTG ...

LEE ...

41733 19 + 6090444 - 6090548 1 105

TTG ...

LVP ...

41735 19 + 10895308 - 10895472 1 165

GTG ...

VRA ...

41737 1 + 134406334 - 134406486 1 153

CTG ...

LGV ...

41739 19 + 8742098 - 8742196 1 99

CTG ...

LTV ...

41741 1 + 165461197 - 165461487 1 291

CTG ...

LSS ...

41743 19 - 7434902 - 7434976 1 75

CTG ...

LSF ...

41745 19 - 5105174 - 5105221 1 48

GTG ...

VTP ...

41747 19 - 53006325 - 53006357 1 33

TTG ...

LTG ...

41750 19 - 41791831 - 41792010 1 180

ATG ...

MPS ...

41753 19 - 6907503 - 6907616 1 114

GTG ...

VVA ...

41755 19 + 53236694 - 53236771 1 78

TTG ...

LKM ...

41757 19 + 20630786 - 20630824 1 39

TTG ...

LSE ...

41759 19 - 24961473 - 24961547 1 75

GTG ...

VSC ...

41761 19 + 5477564 - 5477695 1 132

GTG ...

VDE ...

41764 19 - 4011342 - 4011398 1 57

CTG ...

LKD ...

41766 19 - 29616495 - 29616716 1 222

GTG ...

VSR ...

41769 19 + 8947291 - 8947458 1 168

TTG ...

LAK ...

41771 19 + 3404056 - 3404163 1 108

TTG ...

LIE ...

41773 1 - 135125220 - 135125480 1 261

CTG ...

LRA ...

41775 19 - 5905368 - 5905490 1 123

CTG ...

LLR ...

41777 19 - 6909379 - 6909555 1 177

GTG ...

VLG ...

41781 1 - 135394110 - 135394232 1 123

CTG ...

LCI ...

41783 19 - 53012181 - 53012246 1 66

GTG ...

VSV ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5