Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41552 1 - 55019263 - 55019355 1 93

TTG ...

LMK ...

41554 19 + 4963575 - 4963661 1 87

ATG ...

MLL ...

41557 19 - 6941234 - 6941374 1 141

GTG ...

VGE ...

41560 1 + 85905347 - 85905406 1 60

CTG ...

LCP ...

41562 19 - 5898555 - 5898614 1 60

CTG ...

LCL ...

41566 19 - 10101219 - 10101437 1 219

CTG ...

LAA ...

41568 19 + 26720804 - 26720965 1 162

CTG ...

LPS ...

41570 19 + 26720786 - 26720965 1 180

TTG ...

LME ...

41572 19 + 6051410 - 6051601 1 192

GTG ...

VPP ...

41575 1 - 125405827 - 125405907 1 81

CTG ...

LRD ...

41577 19 - 9134761 - 9134976 1 216

GTG ...

VSL ...

41579 19 + 46270322 - 46270378 1 57

CTG ...

LCK ...

41581 19 + 10902347 - 10902637 1 291

CTG ...

LVF ...

41584 19 + 8909510 - 8909617 1 108

CTG ...

LCL ...

41587 1 - 67009302 - 67009352 1 51

CTG ...

LGK ...

41589 19 - 7199630 - 7199737 1 108

GTG ...

VSA ...

41591 19 - 41791831 - 41791917 1 87

ATG ...

MRN ...

41593 19 + 38935504 - 38935554 1 51

TTG ...

LLT ...

41596 19 + 26676745 - 26676801 1 57

CTG ...

LME ...

41598 19 + 8942327 - 8942365 1 39

GTG ...

VAG ...

41600 19 + 6050042 - 6050095 1 54

GTG ...

VHT ...

41602 19 - 5382964 - 5383023 1 60

TTG ...

LRM ...

41605 19 + 20630684 - 20630776 1 93

TTG ...

LHT ...

41607 19 + 3392146 - 3392265 1 120

CTG ...

LKT ...

41609 19 + 8909504 - 8909617 1 114

ATG ...

MGL ...

41611 19 + 4963608 - 4963661 1 54

CTG ...

LWS ...

41613 19 - 24928323 - 24928355 1 33

ATG ...

MCQ ...

41616 19 - 4352264 - 4352332 1 69

TTG ...

LKE ...

41619 19 + 25506008 - 25506169 1 162

GTG ...

VPR ...

41622 1 - 162740321 - 162740452 1 132

GTG ...

VAR ...

41624 19 + 8764266 - 8764382 1 117

GTG ...

VAQ ...

41628 19 + 38931432 - 38931521 1 90

GTG ...

VIT ...

41631 1 + 194960026 - 194960121 1 96

GTG ...

VTR ...

41634 1 - 160212679 - 160212741 1 63

GTG ...

VAC ...

41636 1 + 134628715 - 134628756 1 42

CTG ...

LTE ...

41638 19 + 46267362 - 46267409 1 48

GTG ...

VSD ...

41641 19 - 6909379 - 6909663 1 285

CTG ...

LWA ...

41643 1 + 172097766 - 172097813 1 48

GTG ...

VKH ...

41646 19 + 26671132 - 26671203 1 72

CTG ...

LDP ...

41648 19 - 9113037 - 9113111 1 75

CTG ...

LGG ...

41650 19 - 53011716 - 53011838 1 123

GTG ...

VDK ...

41652 19 + 31084318 - 31084452 1 135

ATG ...

MVE ...

41654 19 + 38945475 - 38945621 1 147

TTG ...

LMI ...

41656 19 + 20621696 - 20621734 1 39

GTG ...

VNL ...

41658 19 + 21280436 - 21280474 1 39

ATG ...

MWK ...

41660 19 - 5731252 - 5731290 1 39

CTG ...

LCG ...

41662 19 + 46269854 - 46269985 1 132

GTG ...

VPP ...

41664 1 - 10034043 - 10034120 1 78

ATG ...

MQS ...

41666 1 - 184833791 - 184833961 1 171

CTG ...

LKT ...

41669 1 + 42899503 - 42899553 1 51

GTG ...

VNG ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5