Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41438 19 + 10192963 - 10192992 1 30

TTG ...

LWF ...

41440 19 - 41238769 - 41238804 1 36

ATG ...

MEM ...

41442 1 + 191621408 - 191621464 1 57

TTG ...

LQP ...

41444 19 + 5490566 - 5490613 1 48

TTG ...

LLF ...

41446 19 - 44553683 - 44553730 1 48

ATG ...

MRG ...

41449 19 + 44294187 - 44294333 1 147

TTG ...

LIF ...

41451 19 + 8823609 - 8823662 1 54

TTG ...

LVW ...

41453 1 - 165338180 - 165338224 1 45

GTG ...

VVN ...

41455 19 - 5688371 - 5688511 1 141

CTG ...

LAL ...

41457 19 - 5730369 - 5730497 1 129

CTG ...

LQK ...

41460 19 - 5961117 - 5961185 1 69

CTG ...

LRT ...

41463 19 + 20634365 - 20634484 1 120

ATG ...

MIK ...

41465 19 - 10091737 - 10091787 1 51

TTG ...

LVS ...

41467 19 + 3885869 - 3885997 1 129

TTG ...

LDT ...

41469 19 + 26776127 - 26776321 1 195

CTG ...

LNK ...

41471 1 - 36221249 - 36221317 1 69

TTG ...

LTS ...

41473 19 - 41238769 - 41238822 1 54

ATG ...

MAG ...

41475 19 + 53635694 - 53635846 1 153

TTG ...

LMN ...

41478 19 - 41791831 - 41791944 1 114

CTG ...

LTF ...

41481 19 + 6090351 - 6090548 1 198

GTG ...

VCS ...

41483 19 + 29118258 - 29118344 1 87

ATG ...

MAG ...

41486 19 - 53011716 - 53011859 1 144

GTG ...

VPV ...

41488 19 + 8942015 - 8942191 1 177

TTG ...

LPA ...

41490 19 - 41791831 - 41791995 1 165

TTG ...

LSF ...

41492 19 - 4009282 - 4009503 1 222

CTG ...

LIG ...

41494 19 + 44294262 - 44294333 1 72

CTG ...

LAQ ...

41496 19 + 26683809 - 26683937 1 129

GTG ...

VDL ...

41499 19 - 6909379 - 6909588 1 210

CTG ...

LQS ...

41501 19 + 46269809 - 46269985 1 177

GTG ...

VLL ...

41505 1 + 75145034 - 75145120 1 87

TTG ...

LLM ...

41507 19 - 45771796 - 45771861 1 66

ATG ...

MIR ...

41509 19 + 26776115 - 26776321 1 207

GTG ...

VKI ...

41511 19 - 15909338 - 15909454 1 117

GTG ...

VLC ...

41514 19 - 45771796 - 45771867 1 72

ATG ...

MIM ...

41516 19 + 38945439 - 38945621 1 183

TTG ...

LGK ...

41518 19 + 8742263 - 8742301 1 39

ATG ...

MRL ...

41520 19 + 8841178 - 8841294 1 117

CTG ...

LRL ...

41522 19 - 9134761 - 9134910 1 150

GTG ...

VRE ...

41525 19 - 41217107 - 41217145 1 39

TTG ...

LAT ...

41527 19 + 29047867 - 29048034 1 168

CTG ...

LWP ...

41529 19 - 15917020 - 15917178 1 159

GTG ...

VHG ...

41532 19 + 26647055 - 26647174 1 120

CTG ...

LES ...

41534 19 + 8736008 - 8736058 1 51

ATG ...

MRQ ...

41537 19 - 60873179 - 60873247 1 69

GTG ...

VLF ...

41539 19 + 53245076 - 53245117 1 42

ATG ...

MMS ...

41541 19 - 5905368 - 5905487 1 120

TTG ...

LRT ...

41544 19 + 45047816 - 45047869 1 54

ATG ...

MAG ...

41546 1 + 134409621 - 134409704 1 84

CTG ...

LIR ...

41548 19 - 5731179 - 5731286 1 108

GTG ...

VAC ...

41550 19 - 60226332 - 60226412 1 81

CTG ...

LRL ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5