Metam
ORF

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M.musculus

ORFs

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MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

Chromosome

The name of the chromosome (or scaffold) the ORF is located on.

Strand

The strand of the ORF (+ or -)

Start - stop
positions

The absolute genomic positions (i.e. the positions on the chromosome) of the start and stop codons of the ORF (in a 1-based system).

Exons

The number of exons constituting the ORF

ORF length

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

41296 19 - 32706849 - 32706881 1 33

ATG ...

MPL ...

41300 19 + 26640402 - 26640653 1 252

CTG ...

LLL ...

41303 19 - 41238697 - 41238732 1 36

TTG ...

LLC ...

41305 19 + 8771091 - 8771222 1 132

ATG ...

MAS ...

41308 19 - 7429737 - 7429793 1 57

ATG ...

MLG ...

41311 1 - 178330158 - 178330253 1 96

GTG ...

VAL ...

41313 19 - 52999148 - 52999210 1 63

ATG ...

MEP ...

41316 19 + 47865878 - 47865928 1 51

CTG ...

LGG ...

41323 19 - 44069268 - 44069339 1 72

TTG ...

LVA ...

41326 19 - 44069268 - 44069357 1 90

GTG ...

VAA ...

41329 19 - 60871475 - 60871543 1 69

CTG ...

LLS ...

41331 19 + 38946734 - 38946895 1 162

CTG ...

LLY ...

41334 1 - 65030564 - 65030617 1 54

ATG ...

MAT ...

41337 19 + 3892128 - 3892217 1 90

TTG ...

LTT ...

41341 19 - 7199965 - 7199994 1 30

TTG ...

LAS ...

41344 19 - 9116502 - 9116603 1 102

GTG ...

VLL ...

41347 19 - 6941234 - 6941383 1 150

GTG ...

VDA ...

41350 19 + 36411990 - 36412085 1 96

ATG ...

MLS ...

41353 19 + 37207592 - 37207777 1 186

ATG ...

MDR ...

41356 19 + 20624761 - 20624829 1 69

CTG ...

LQG ...

41359 19 + 8942144 - 8942191 1 48

GTG ...

VSR ...

41362 19 - 46669113 - 46669259 1 147

GTG ...

VFS ...

41365 19 - 7429737 - 7429802 1 66

TTG ...

LTT ...

41367 19 + 6294396 - 6294668 1 273

CTG ...

LMR ...

41370 19 - 53006172 - 53006231 1 60

GTG ...

VLT ...

41372 19 - 10874324 - 10874452 1 129

ATG ...

MEQ ...

41375 1 - 75142255 - 75142383 1 129

GTG ...

VTL ...

41378 19 - 46669113 - 46669319 1 207

CTG ...

LIQ ...

41380 19 + 6061729 - 6061782 1 54

ATG ...

MPL ...

41383 19 - 47045802 - 47045840 1 39

TTG ...

LIC ...

41386 19 + 3392122 - 3392265 1 144

GTG ...

VVV ...

41389 19 - 6907503 - 6907583 1 81

GTG ...

VIE ...

41391 1 - 164443267 - 164443320 1 54

CTG ...

LRS ...

41395 19 + 26640435 - 26640653 1 219

CTG ...

LSA ...

41397 19 + 8754922 - 8755068 1 147

GTG ...

VLG ...

41400 19 - 6941239 - 6941352 1 114

TTG ...

LRT ...

41402 19 + 6090420 - 6090548 1 129

TTG ...

LVP ...

41405 19 - 9116502 - 9116600 1 99

CTG ...

LLP ...

41407 19 + 21272454 - 21272501 1 48

CTG ...

LWR ...

41411 19 - 34252421 - 34252513 1 93

ATG ...

MAL ...

41413 1 - 135116515 - 135116625 1 111

CTG ...

LVA ...

41415 19 + 3864682 - 3864798 1 117

CTG ...

LPD ...

41417 19 + 4097823 - 4097921 1 99

GTG ...

VSH ...

41420 19 - 53012181 - 53012240 1 60

GTG ...

VLP ...

41423 19 - 46395659 - 46395715 1 57

CTG ...

LAV ...

41425 19 + 8764559 - 8764651 1 93

GTG ...

VQK ...

41428 19 + 5088597 - 5088644 1 48

GTG ...

VSG ...

41431 19 - 9116502 - 9116609 1 108

CTG ...

LWV ...

41433 19 + 6294564 - 6294668 1 105

CTG ...

LPR ...

41435 19 + 45076665 - 45076844 1 180

GTG ...

VPP ...

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Export data

Identification method

Predicted

Ribo-seq

MS

Start Codon

Kozak context

moderate

weak

strong

optimal

ORF length

Transcript biotype

antisense

antisense_RNA

bidirectional_promoter_lncRNA

IG_C_gene

lincRNA

non_stop_decay

nonsense_mediated_decay

polymorphic_pseudogene

processed_pseudogene

processed_transcript

protein_coding

pseudogene

retained_intron

sense_intronic

sense_overlapping

TEC

transcribed_processed_pseudogene

transcribed_unitary_pseudogene

transcribed_unprocessed_pseudogene

unprocessed_pseudogene

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5